Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G386800.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS2A01G389000.1 | Wheat | nucleus | 100.0 | 100.0 |
| Os08t0366100-01 | Rice | extracellular, nucleus, plasma membrane | 92.25 | 92.25 |
| EES14877 | Sorghum | nucleus | 91.55 | 91.55 |
| Zm00001d032359_P002 | Maize | extracellular | 90.85 | 90.85 |
| Zm00001d049320_P001 | Maize | nucleus | 90.14 | 90.14 |
| KRH25792 | Soybean | nucleus | 83.1 | 83.1 |
| TraesCS3B01G169100.1 | Wheat | nucleus | 81.69 | 81.69 |
| KRH55727 | Soybean | nucleus | 81.69 | 81.69 |
| KRH55726 | Soybean | nucleus | 81.69 | 81.69 |
| GSMUA_Achr1P04810_001 | Banana | nucleus | 80.99 | 80.99 |
| GSMUA_Achr9P00250_001 | Banana | nucleus | 80.28 | 80.28 |
| AT2G42680.1 | Thale cress | nucleus | 80.28 | 80.28 |
| GSMUA_Achr1P11510_001 | Banana | nucleus | 80.28 | 80.28 |
| Bra000272.1-P | Field mustard | nucleus | 78.87 | 78.87 |
| CDY42821 | Canola | nucleus | 78.87 | 78.87 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 78.87 | 78.87 |
| CDX98319 | Canola | nucleus | 78.87 | 78.87 |
| CDX88998 | Canola | nucleus | 78.87 | 78.87 |
| CDX83520 | Canola | nucleus | 78.87 | 78.87 |
| AT3G58680.1 | Thale cress | nucleus | 78.17 | 78.17 |
| Bra014559.1-P | Field mustard | nucleus | 78.17 | 78.17 |
| Solyc10g007350.2.1 | Tomato | nucleus | 75.35 | 76.98 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 76.76 | 76.76 |
| CDX79844 | Canola | nucleus | 76.76 | 76.76 |
| Bra004725.1-P | Field mustard | nucleus | 76.76 | 76.76 |
| CDY50816 | Canola | nucleus | 76.06 | 76.06 |
| CDY00581 | Canola | nucleus | 76.06 | 76.06 |
| Solyc09g055470.1.1 | Tomato | nucleus | 73.94 | 75.54 |
| Solyc12g014290.1.1 | Tomato | nucleus | 73.24 | 74.82 |
| Bra007411.1-P | Field mustard | nucleus | 59.15 | 73.68 |
| Solyc07g062400.2.1 | Tomato | nucleus | 71.13 | 72.14 |
| CDY52458 | Canola | nucleus | 53.52 | 64.96 |
| CDY49243 | Canola | cytosol | 75.35 | 63.31 |
| HORVU2Hr1G092600.4 | Barley | extracellular, nucleus | 98.59 | 62.5 |
| TraesCS7B01G259000.1 | Wheat | cytosol | 45.07 | 41.03 |
| PGSC0003DMT400054878 | Potato | nucleus | 23.94 | 23.61 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G407000.1 | EnsemblPlantsGene:TraesCS2B01G407000 | Gene3D:1.10.260.40 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0043565 | InterPro:Cro/C1-type_HTH | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf | InterPro:MBF1_N |
| ncoils:Coil | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF101 | PFAM:PF01381 | PFAM:PF08523 | PFscan:PS50943 |
| SMART:SM00530 | SUPFAM:SSF47413 | TIGR:cd00093 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2B:+:576691533..576696022
Molecular Weight (calculated)
15716.8 Da
IEP (calculated)
10.602
GRAVY (calculated)
-0.949
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIGPIRQD WEPIVVRKKA QNAADKKDEK AVNAARRSGA EIDTTKKYNA GTNKAASSGT SLNTKRLDDD TENLSHERVS SDLKKNLMQA RLDKKMTQAQ
101: LAQMINEKPQ VIQEYESGKA IPNNQIIGKL ERALGAKLRS KK
101: LAQMINEKPQ VIQEYESGKA IPNNQIIGKL ERALGAKLRS KK
001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.