CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83520	Canola	nucleus	97.18	97.18
CDY42821	Canola	nucleus	97.18	97.18
CDX88998	Canola	nucleus	95.77	95.77
CDX79844	Canola	nucleus	94.37	94.37
CDY50816	Canola	nucleus	93.66	93.66
CDY00581	Canola	nucleus	92.96	92.96
AT3G58680.1	Thale cress	nucleus	91.55	91.55
KRH55726	Soybean	nucleus	88.03	88.03
KRH55727	Soybean	nucleus	86.62	86.62
KRH25792	Soybean	nucleus	86.62	86.62
Solyc10g007350.2.1	Tomato	nucleus	81.69	83.45
Zm00001d032359_P002	Maize	extracellular	83.1	83.1
Zm00001d049320_P001	Maize	nucleus	82.39	82.39
VIT_12s0028g02020.t01	Wine grape	nucleus	82.39	82.39
EES14877	Sorghum	nucleus	82.39	82.39
Solyc09g055470.1.1	Tomato	nucleus	80.28	82.01
Solyc12g014290.1.1	Tomato	nucleus	80.28	82.01
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	81.69	81.69
CDY52458	Canola	nucleus	66.9	81.2
GSMUA_Achr1P11510_001	Banana	nucleus	80.99	80.99
TraesCS3D01G151300.1	Wheat	nucleus	80.28	80.28
TraesCS3B01G169100.1	Wheat	nucleus	80.28	80.28
VIT_19s0014g01260.t01	Wine grape	nucleus	80.28	80.28
TraesCS3A01G135300.1	Wheat	nucleus	80.28	80.28
Solyc07g062400.2.1	Tomato	nucleus	78.87	80.0
GSMUA_Achr9P00250_001	Banana	nucleus	78.87	78.87
TraesCS2D01G386800.1	Wheat	nucleus	78.87	78.87
TraesCS2B01G407000.1	Wheat	nucleus	78.87	78.87
TraesCS2A01G389000.1	Wheat	nucleus	78.87	78.87
GSMUA_Achr1P04810_001	Banana	nucleus	78.87	78.87
CDY49243	Canola	cytosol	93.66	78.7
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	78.17	49.55
CDX77422	Canola	cytosol	50.0	47.97
CDY39547	Canola	cytosol	50.0	33.02
PGSC0003DMT400054878	Potato	nucleus	26.76	26.39

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	GO:A0A078EBZ3	EnsemblPlants:CDX98319	ProteinID:CDX98319	ProteinID:CDX98319.1
ncoils:Coil	InterPro:Cro/C1-type_HTH	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00105863001	InterPro:IPR001387	InterPro:Lambda_DNA-bd_dom_sf	InterPro:MBF1_N	PFAM:PF01381
PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF23	SMART:SM00530	SUPFAM:SSF47413
UniParc:UPI0004EB6573	:	:	:	:	:

Description

BnaC06g16800D

Coordinates

chrLK031904:+:558239..559539

Molecular Weight (calculated)

15653.8 Da

IEP (calculated)

10.581

GRAVY (calculated)

-0.853

Length

142 amino acids

Sequence
(BLAST)

001: MAGVGPMTQD WEPVVIRKKA PNSAAKRDEK TVNAARRSGA DIESVRKYNA GTNKAASSGT SLNTKRLDDD TENLAHERVP TELKKAIMQA RCEKKLTQSQ
101: LAQLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Best Arabidopsis Sequence Match ( AT3G58680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKRA PNAAAKRDEK TVNAARRSGA DIETVRKFNA GSNKAASSGT SLNTKKLDDD TENLSHDRVP TELKKAIMQA RGEKKLTQSQ
101: LAHLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1BMultiprotein-bridging factor 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9LXT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.