Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88998 | Canola | nucleus | 97.18 | 97.18 |
| Bra014559.1-P | Field mustard | nucleus | 96.48 | 96.48 |
| CDX98319 | Canola | nucleus | 92.96 | 92.96 |
| CDX83520 | Canola | nucleus | 90.85 | 90.85 |
| CDY42821 | Canola | nucleus | 90.85 | 90.85 |
| CDY50816 | Canola | nucleus | 88.73 | 88.73 |
| AT3G58680.1 | Thale cress | nucleus | 88.03 | 88.03 |
| CDX79844 | Canola | nucleus | 88.03 | 88.03 |
| CDY52458 | Canola | nucleus | 69.72 | 84.62 |
| KRH55726 | Soybean | nucleus | 84.51 | 84.51 |
| KRH25792 | Soybean | nucleus | 83.8 | 83.8 |
| KRH55727 | Soybean | nucleus | 83.8 | 83.8 |
| Zm00001d049320_P001 | Maize | nucleus | 81.69 | 81.69 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 81.69 | 81.69 |
| EES14877 | Sorghum | nucleus | 80.99 | 80.99 |
| Zm00001d032359_P002 | Maize | extracellular | 80.99 | 80.99 |
| Os08t0366100-01 | Rice | extracellular, nucleus, plasma membrane | 80.28 | 80.28 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 79.58 | 79.58 |
| TraesCS3D01G151300.1 | Wheat | nucleus | 79.58 | 79.58 |
| TraesCS3B01G169100.1 | Wheat | nucleus | 79.58 | 79.58 |
| TraesCS3A01G135300.1 | Wheat | nucleus | 79.58 | 79.58 |
| Solyc12g014290.1.1 | Tomato | nucleus | 77.46 | 79.14 |
| Solyc10g007350.2.1 | Tomato | nucleus | 77.46 | 79.14 |
| GSMUA_Achr1P11510_001 | Banana | nucleus | 78.17 | 78.17 |
| Solyc09g055470.1.1 | Tomato | nucleus | 76.06 | 77.7 |
| GSMUA_Achr9P00250_001 | Banana | nucleus | 77.46 | 77.46 |
| Solyc07g062400.2.1 | Tomato | nucleus | 76.06 | 77.14 |
| TraesCS2A01G389000.1 | Wheat | nucleus | 76.06 | 76.06 |
| TraesCS2B01G407000.1 | Wheat | nucleus | 76.06 | 76.06 |
| TraesCS2D01G386800.1 | Wheat | nucleus | 76.06 | 76.06 |
| GSMUA_Achr1P04810_001 | Banana | nucleus | 76.06 | 76.06 |
| CDY49243 | Canola | cytosol | 90.14 | 75.74 |
| HORVU2Hr1G092600.4 | Barley | extracellular, nucleus | 75.35 | 47.77 |
| CDX77422 | Canola | cytosol | 47.18 | 45.27 |
| CDY39547 | Canola | cytosol | 47.89 | 31.63 |
| PGSC0003DMT400054878 | Potato | nucleus | 25.35 | 25.0 |
Protein Annotations
| Gene3D:1.10.260.40 | MapMan:35.1 | GO:A0A078EHI5 | EnsemblPlants:CDY00581 | ProteinID:CDY00581 | ProteinID:CDY00581.1 |
| InterPro:Cro/C1-type_HTH | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00110343001 | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf | InterPro:MBF1_N | PFAM:PF01381 | PFAM:PF08523 |
| PFscan:PS50943 | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF23 | SMART:SM00530 | SUPFAM:SSF47413 | UniParc:UPI0004EE0CB2 |
Description
BnaC04g23440D
Coordinates
chrLK031920:+:452366..453771
Molecular Weight (calculated)
15738.0 Da
IEP (calculated)
10.750
GRAVY (calculated)
-0.867
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVGPMTQD WEPVVIRKKT PNAAAKREEK TVNAARRSGA EIESVRKHNV GTNKAASSGT SLNTKRLDDD TENLAHERVP TELKKAIMQT RGEKKLTQSQ
101: LAQLINEKPQ VIQEYESGKA IPNQQILIKL ERALGTKLRG KK
101: LAQLINEKPQ VIQEYESGKA IPNQQILIKL ERALGTKLRG KK
001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.