CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55727	Soybean	nucleus	98.59	98.59
KRH25792	Soybean	nucleus	97.18	97.18
Solyc10g007350.2.1	Tomato	nucleus	86.62	88.49
CDX98319	Canola	nucleus	88.03	88.03
CDY42821	Canola	nucleus	87.32	87.32
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	87.32	87.32
Zm00001d032359_P002	Maize	extracellular	87.32	87.32
CDX88998	Canola	nucleus	87.32	87.32
CDX83520	Canola	nucleus	87.32	87.32
Bra000272.1-P	Field mustard	nucleus	87.32	87.32
Solyc09g055470.1.1	Tomato	nucleus	85.21	87.05
Zm00001d049320_P001	Maize	nucleus	86.62	86.62
Bra014559.1-P	Field mustard	nucleus	86.62	86.62
EES14877	Sorghum	nucleus	86.62	86.62
Solyc12g014290.1.1	Tomato	nucleus	84.51	86.33
Solyc07g062400.2.1	Tomato	nucleus	84.51	85.71
AT2G42680.1	Thale cress	nucleus	85.21	85.21
Bra007411.1-P	Field mustard	nucleus	68.31	85.09
CDX79844	Canola	nucleus	84.51	84.51
CDY00581	Canola	nucleus	84.51	84.51
VIT_12s0028g02020.t01	Wine grape	nucleus	84.51	84.51
Bra004725.1-P	Field mustard	nucleus	84.51	84.51
AT3G58680.1	Thale cress	nucleus	83.8	83.8
CDY50816	Canola	nucleus	83.8	83.8
GSMUA_Achr1P11510_001	Banana	nucleus	83.1	83.1
TraesCS3A01G135300.1	Wheat	nucleus	82.39	82.39
TraesCS3B01G169100.1	Wheat	nucleus	82.39	82.39
TraesCS3D01G151300.1	Wheat	nucleus	82.39	82.39
GSMUA_Achr1P04810_001	Banana	nucleus	81.69	81.69
TraesCS2A01G389000.1	Wheat	nucleus	81.69	81.69
TraesCS2B01G407000.1	Wheat	nucleus	81.69	81.69
TraesCS2D01G386800.1	Wheat	nucleus	81.69	81.69
VIT_19s0014g01260.t01	Wine grape	nucleus	81.69	81.69
GSMUA_Achr9P00250_001	Banana	nucleus	80.28	80.28
CDY52458	Canola	nucleus	59.15	71.79
CDY49243	Canola	cytosol	84.51	71.01
KRH25791	Soybean	nucleus	45.07	70.33
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	81.69	51.79

Protein Annotations

Gene3D:1.10.260.40	EntrezGene:100499864	MapMan:35.1	EMBL:ACUP02004053	EMBL:BT089887	UniProt:C6SXJ2
ncoils:Coil	InterPro:Cro/C1-type_HTH	EnsemblPlantsGene:GLYMA_06G276200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0043565	InterPro:IPR001387	EnsemblPlants:KRH55726	ProteinID:KRH55726	ProteinID:KRH55726.1
InterPro:Lambda_DNA-bd_dom_sf	InterPro:MBF1_N	PFAM:PF01381	PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245
PANTHER:PTHR10245:SF23	SMART:SM00530	SUPFAM:SSF47413	UniParc:UPI0001B15364	:	:

Description

hypothetical protein

Coordinates

chr6:-:46728471..46731272

Molecular Weight (calculated)

15523.7 Da

IEP (calculated)

10.572

GRAVY (calculated)

-0.777

Length

142 amino acids

Sequence
(BLAST)

001: MSGVGPLSQD WEPVVLRKKA PTAAAKKDEK AVNAARRSGA EIETLKKYNA GTNKAASSGT SLNTKRLDDD TESLAHEKVP TELKKAIMQA RMDKKLTQSQ
101: LAQLINEKPQ VIQEYESGKA IPNQQIISKL ERALGAKLRG KK

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.