Factsheet for Bra000272.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83520	Canola	nucleus	100.0	100.0
CDY42821	Canola	nucleus	100.0	100.0
Bra007411.1-P	Field mustard	nucleus	76.76	95.61
Bra004725.1-P	Field mustard	nucleus	94.37	94.37
Bra014559.1-P	Field mustard	nucleus	92.96	92.96
AT2G42680.1	Thale cress	nucleus	92.96	92.96
KRH55726	Soybean	nucleus	87.32	87.32
KRH55727	Soybean	nucleus	85.92	85.92
KRH25792	Soybean	nucleus	85.92	85.92
Zm00001d032359_P002	Maize	extracellular	83.1	83.1
Solyc10g007350.2.1	Tomato	nucleus	80.99	82.73
Zm00001d049320_P001	Maize	nucleus	82.39	82.39
VIT_12s0028g02020.t01	Wine grape	nucleus	82.39	82.39
EES14877	Sorghum	nucleus	82.39	82.39
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	81.69	81.69
Solyc09g055470.1.1	Tomato	nucleus	79.58	81.3
Solyc12g014290.1.1	Tomato	nucleus	79.58	81.3
VIT_19s0014g01260.t01	Wine grape	nucleus	80.28	80.28
GSMUA_Achr1P11510_001	Banana	nucleus	80.28	80.28
TraesCS3A01G135300.1	Wheat	nucleus	80.28	80.28
TraesCS3B01G169100.1	Wheat	nucleus	80.28	80.28
TraesCS3D01G151300.1	Wheat	nucleus	80.28	80.28
Solyc07g062400.2.1	Tomato	nucleus	78.17	79.29
TraesCS2A01G389000.1	Wheat	nucleus	78.87	78.87
TraesCS2B01G407000.1	Wheat	nucleus	78.87	78.87
TraesCS2D01G386800.1	Wheat	nucleus	78.87	78.87
GSMUA_Achr1P04810_001	Banana	nucleus	78.87	78.87
GSMUA_Achr9P00250_001	Banana	nucleus	77.46	77.46
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	79.58	50.45
Bra015048.1-P	Field mustard	cytosol	50.0	38.59
PGSC0003DMT400054878	Potato	nucleus	26.76	26.39

Protein Annotations

EnsemblPlants:Bra000272.1	EnsemblPlants:Bra000272.1-P	EnsemblPlantsGene:Bra000272	Gene3D:1.10.260.40	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0043565	InterPro:Cro/C1-type_HTH	InterPro:IPR001387	InterPro:Lambda_DNA-bd_dom_sf
InterPro:MBF1_N	PANTHER:PTHR10245	PANTHER:PTHR10245:SF23	PFAM:PF01381	PFAM:PF08523	PFscan:PS50943
SMART:SM00530	SUPFAM:SSF47413	UniParc:UPI0001BA7BD2	UniProt:M4C7U4	MapMan:35.1	:

Description

AT2G42680 (E=1e-070) MBF1A, ATMBF1A | MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator

Coordinates

chrA03:+:10278330..10279433

Molecular Weight (calculated)

15665.7 Da

IEP (calculated)

10.715

GRAVY (calculated)

-0.875

Length

142 amino acids

Sequence
(BLAST)

001: MAGVGPMTQD WEPVVIRKRA PNSAAKRDEK TVNAARRSGA DIESVRKYNA GTNKAASSGT SLNTKRLDDD TENLAHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.