CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25792	Soybean	nucleus	98.59	98.59
KRH55726	Soybean	nucleus	98.59	98.59
Solyc10g007350.2.1	Tomato	nucleus	86.62	88.49
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	87.32	87.32
Solyc09g055470.1.1	Tomato	nucleus	85.21	87.05
EES14877	Sorghum	nucleus	86.62	86.62
Zm00001d049320_P001	Maize	nucleus	86.62	86.62
CDX88998	Canola	nucleus	86.62	86.62
CDX98319	Canola	nucleus	86.62	86.62
Solyc12g014290.1.1	Tomato	nucleus	84.51	86.33
CDY42821	Canola	nucleus	85.92	85.92
CDX83520	Canola	nucleus	85.92	85.92
Zm00001d032359_P002	Maize	extracellular	85.92	85.92
Bra014559.1-P	Field mustard	nucleus	85.92	85.92
Bra000272.1-P	Field mustard	nucleus	85.92	85.92
Solyc07g062400.2.1	Tomato	nucleus	84.51	85.71
VIT_12s0028g02020.t01	Wine grape	nucleus	85.21	85.21
CDX79844	Canola	nucleus	84.51	84.51
Bra004725.1-P	Field mustard	nucleus	84.51	84.51
Bra007411.1-P	Field mustard	nucleus	67.61	84.21
AT2G42680.1	Thale cress	nucleus	83.8	83.8
GSMUA_Achr1P11510_001	Banana	nucleus	83.8	83.8
CDY50816	Canola	nucleus	83.8	83.8
CDY00581	Canola	nucleus	83.8	83.8
TraesCS3B01G169100.1	Wheat	nucleus	83.1	83.1
TraesCS3D01G151300.1	Wheat	nucleus	83.1	83.1
TraesCS3A01G135300.1	Wheat	nucleus	83.1	83.1
VIT_19s0014g01260.t01	Wine grape	nucleus	82.39	82.39
AT3G58680.1	Thale cress	nucleus	82.39	82.39
GSMUA_Achr1P04810_001	Banana	nucleus	82.39	82.39
TraesCS2B01G407000.1	Wheat	nucleus	81.69	81.69
TraesCS2D01G386800.1	Wheat	nucleus	81.69	81.69
TraesCS2A01G389000.1	Wheat	nucleus	81.69	81.69
GSMUA_Achr9P00250_001	Banana	nucleus	80.99	80.99
KRH25791	Soybean	nucleus	45.77	71.43
CDY49243	Canola	cytosol	84.51	71.01
CDY52458	Canola	nucleus	58.45	70.94
HORVU2Hr1G092600.4	Barley	extracellular, nucleus	81.69	51.79

Protein Annotations

Gene3D:1.10.260.40	EntrezGene:100804567	MapMan:35.1	EMBL:ACUP02004053	ncoils:Coil	InterPro:Cro/C1-type_HTH
EnsemblPlantsGene:GLYMA_06G276300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0043565
UniProt:I1KEM1	InterPro:IPR001387	EnsemblPlants:KRH55727	ProteinID:KRH55727	ProteinID:KRH55727.1	InterPro:Lambda_DNA-bd_dom_sf
InterPro:MBF1_N	PFAM:PF01381	PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF101
SMART:SM00530	SUPFAM:SSF47413	UniParc:UPI000196240A	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:46741087..46743763

Molecular Weight (calculated)

15523.7 Da

IEP (calculated)

10.572

GRAVY (calculated)

-0.777

Length

142 amino acids

Sequence
(BLAST)

001: MSGVGPLSQD WEPVVLRKKA PTAAAKKDEK AVNAARRSGA EIETLKKYNA GTNKAASSST SLNTKRLDDD TESLAHEKVP TELKKAIMQA RMDKKLTQSQ
101: LAQLINEKPQ VIQEYESGKA IPNQQIIGKL ERALGAKLRG KK

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.