Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004725.1-P | Field mustard | nucleus | 99.3 | 99.3 |
| CDX79844 | Canola | nucleus | 99.3 | 99.3 |
| CDX83520 | Canola | nucleus | 93.66 | 93.66 |
| CDX98319 | Canola | nucleus | 93.66 | 93.66 |
| CDY42821 | Canola | nucleus | 93.66 | 93.66 |
| CDX88998 | Canola | nucleus | 91.55 | 91.55 |
| AT2G42680.1 | Thale cress | nucleus | 91.55 | 91.55 |
| CDY00581 | Canola | nucleus | 88.73 | 88.73 |
| KRH55726 | Soybean | nucleus | 83.8 | 83.8 |
| KRH55727 | Soybean | nucleus | 83.8 | 83.8 |
| KRH25792 | Soybean | nucleus | 83.8 | 83.8 |
| Solyc12g014290.1.1 | Tomato | nucleus | 81.69 | 83.45 |
| Solyc10g007350.2.1 | Tomato | nucleus | 81.69 | 83.45 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 82.39 | 82.39 |
| Solyc09g055470.1.1 | Tomato | nucleus | 80.28 | 82.01 |
| Zm00001d032359_P002 | Maize | extracellular | 80.99 | 80.99 |
| GSMUA_Achr1P11510_001 | Banana | nucleus | 80.99 | 80.99 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 80.99 | 80.99 |
| TraesCS3D01G151300.1 | Wheat | nucleus | 80.99 | 80.99 |
| TraesCS3B01G169100.1 | Wheat | nucleus | 80.99 | 80.99 |
| TraesCS3A01G135300.1 | Wheat | nucleus | 80.99 | 80.99 |
| EES14877 | Sorghum | nucleus | 80.28 | 80.28 |
| GSMUA_Achr9P00250_001 | Banana | nucleus | 79.58 | 79.58 |
| GSMUA_Achr1P04810_001 | Banana | nucleus | 79.58 | 79.58 |
| Zm00001d049320_P001 | Maize | nucleus | 79.58 | 79.58 |
| Solyc07g062400.2.1 | Tomato | nucleus | 78.17 | 79.29 |
| Os08t0366100-01 | Rice | extracellular, nucleus, plasma membrane | 78.17 | 78.17 |
| CDY49243 | Canola | cytosol | 91.55 | 76.92 |
| CDY52458 | Canola | nucleus | 62.68 | 76.07 |
| TraesCS2A01G389000.1 | Wheat | nucleus | 76.06 | 76.06 |
| TraesCS2B01G407000.1 | Wheat | nucleus | 76.06 | 76.06 |
| TraesCS2D01G386800.1 | Wheat | nucleus | 76.06 | 76.06 |
| HORVU2Hr1G092600.4 | Barley | extracellular, nucleus | 76.76 | 48.66 |
| CDX77422 | Canola | cytosol | 49.3 | 47.3 |
| CDY39547 | Canola | cytosol | 49.3 | 32.56 |
| PGSC0003DMT400054878 | Potato | nucleus | 26.06 | 25.69 |
Protein Annotations
| Gene3D:1.10.260.40 | MapMan:35.1 | GO:A0A078ILD9 | UniProt:A0A078ILD9 | EnsemblPlants:CDY50816 | ProteinID:CDY50816 |
| ProteinID:CDY50816.1 | ncoils:Coil | InterPro:Cro/C1-type_HTH | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00097540001 | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf | InterPro:MBF1_N |
| PFAM:PF01381 | PFAM:PF08523 | PFscan:PS50943 | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF23 | SMART:SM00530 |
| SUPFAM:SSF47413 | UniParc:UPI0004EC0CAC | : | : | : | : |
Description
BnaC04g52530DBnaC04g52530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILD9]
Coordinates
chrLK032942:+:22848..24016
Molecular Weight (calculated)
15658.7 Da
IEP (calculated)
10.697
GRAVY (calculated)
-0.902
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTGPMTQD WEPVVIRKRA PNSAAKRDEK TVNAARRAGA DIETVRKHNA GTNKAASSST SLNTKTLDDD TENLTHERVP TELKKAIMQA RTEKKLTQSQ
101: LAQLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAQLINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.