Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G24500.1 | Thale cress | cytosol | 93.92 | 93.92 |
| Bra015048.1-P | Field mustard | cytosol | 95.95 | 77.17 |
| VIT_11s0016g04080.t01 | Wine grape | cytosol | 73.65 | 75.69 |
| PGSC0003DMT400076572 | Potato | cytosol | 66.89 | 67.81 |
| CDY39547 | Canola | cytosol | 95.27 | 65.58 |
| Solyc01g104740.2.1 | Tomato | extracellular | 64.19 | 65.07 |
| EER89991 | Sorghum | cytosol | 62.16 | 59.35 |
| TraesCS7D01G353800.1 | Wheat | cytosol | 60.14 | 57.79 |
| TraesCS7A01G369500.1 | Wheat | cytosol | 58.11 | 56.95 |
| Os06t0592500-01 | Rice | cytosol | 59.46 | 56.77 |
| HORVU7Hr1G085130.1 | Barley | cytosol | 59.46 | 56.41 |
| TraesCS7B01G259000.1 | Wheat | cytosol | 59.46 | 56.41 |
| CDX98319 | Canola | nucleus | 47.97 | 50.0 |
| CDY42821 | Canola | nucleus | 47.3 | 49.3 |
| CDY50816 | Canola | nucleus | 47.3 | 49.3 |
| CDX88998 | Canola | nucleus | 47.3 | 49.3 |
| CDX83520 | Canola | nucleus | 47.3 | 49.3 |
| CDX79844 | Canola | nucleus | 47.3 | 49.3 |
| CDY00581 | Canola | nucleus | 45.27 | 47.18 |
| Zm00001d046471_P001 | Maize | nucleus, plastid | 46.62 | 43.4 |
| CDY49243 | Canola | cytosol | 47.3 | 41.42 |
| CDY52458 | Canola | nucleus | 31.76 | 40.17 |
Protein Annotations
| Gene3D:1.10.260.40 | MapMan:35.1 | GO:A0A078CL08 | EnsemblPlants:CDX77422 | ProteinID:CDX77422 | ProteinID:CDX77422.1 |
| InterPro:Cro/C1-type_HTH | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00128267001 | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf | InterPro:MBF1_N | PFAM:PF01381 | PFAM:PF08523 |
| PFscan:PS50943 | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF71 | SMART:SM00530 | SUPFAM:SSF47413 | UniParc:UPI0004EE3F6C |
Description
BnaA07g05600D
Coordinates
chrLK031811:-:445036..445641
Molecular Weight (calculated)
16395.1 Da
IEP (calculated)
10.848
GRAVY (calculated)
-0.705
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSRYPGAVT QDWEPVVLHK TKPKSQDLRD PKAVNAALRS GLAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPSAM DRVKAEVRLA IQKARLEKKM
101: SQADLAKQIN KRTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKHVK
101: SQADLAKQIN KRTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKHVK
001: MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
Arabidopsis Description
MBF1CMBF1C [Source:UniProtKB/TrEMBL;Acc:A0A178VDH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.