Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G259000.1 | Wheat | cytosol | 88.39 | 87.82 |
| TraesCS7D01G353800.1 | Wheat | cytosol | 85.16 | 85.71 |
| TraesCS7A01G369500.1 | Wheat | cytosol | 83.23 | 85.43 |
| EER89991 | Sorghum | cytosol | 83.87 | 83.87 |
| HORVU7Hr1G085130.1 | Barley | cytosol | 83.87 | 83.33 |
| Zm00001d046471_P001 | Maize | nucleus, plastid | 62.58 | 61.01 |
| VIT_11s0016g04080.t01 | Wine grape | cytosol | 56.13 | 60.42 |
| CDX77422 | Canola | cytosol | 56.77 | 59.46 |
| AT3G24500.1 | Thale cress | cytosol | 55.48 | 58.11 |
| PGSC0003DMT400076572 | Potato | cytosol | 53.55 | 56.85 |
| Solyc01g104740.2.1 | Tomato | extracellular | 53.55 | 56.85 |
| Bra015048.1-P | Field mustard | cytosol | 57.42 | 48.37 |
| Os08t0366100-01 | Rice | extracellular, nucleus, plasma membrane | 43.23 | 47.18 |
| CDY39547 | Canola | cytosol | 56.77 | 40.93 |
Protein Annotations
| Gene3D:1.10.260.40 | MapMan:35.1 | EntrezGene:4341420 | EMBL:AK119729 | EMBL:AK122052 | ProteinID:BAD32863.1 |
| ProteinID:BAF19888.1 | ProteinID:BAS98436.1 | InterPro:Cro/C1-type_HTH | ProteinID:EAZ37516.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:1903506 | GO:GO:1903508 | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf |
| InterPro:MBF1_N | EnsemblPlantsGene:Os06g0592500 | EnsemblPlants:Os06t0592500-01 | PFAM:PF01381 | PFAM:PF08523 | PFscan:PS50943 |
| PANTHER:PTHR10245 | PANTHER:PTHR10245:SF71 | UniProt:Q69XD8 | SMART:SM00530 | SUPFAM:SSF47413 | UniParc:UPI00003FF276 |
| RefSeq:XP_015641831.1 | SEG:seg | : | : | : | : |
Description
Similar to Ethylene-responsive transcriptional coactivator. (Os06t0592500-01)
Coordinates
chr6:-:23293383..23294073
Molecular Weight (calculated)
16155.6 Da
IEP (calculated)
11.377
GRAVY (calculated)
-0.400
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTGRLSGNI TQDWEPVVLR RTKPKAADLK STRAVNQAMR TGAPVETVRK AAAGTNKAAA GAAAPARKLD ESTEPAGLGR VGAEVRGAIQ KARVAKGWSQ
101: AELAKRINER AQVVQEYESG KAVPVQAVLA KMERALEVKL RGKAVGAPAA PAGAK
101: AELAKRINER AQVVQEYESG KAVPVQAVLA KMERALEVKL RGKAVGAPAA PAGAK
001: MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
Arabidopsis Description
MBF1CMBF1C [Source:UniProtKB/TrEMBL;Acc:A0A178VDH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.