Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G24500.1 | Thale cress | cytosol | 77.08 | 75.0 |
| CDX77422 | Canola | cytosol | 75.69 | 73.65 |
| PGSC0003DMT400076572 | Potato | cytosol | 72.92 | 71.92 |
| Solyc01g104740.2.1 | Tomato | extracellular | 69.44 | 68.49 |
| TraesCS7D01G353800.1 | Wheat | cytosol | 63.19 | 59.09 |
| Bra015048.1-P | Field mustard | cytosol | 75.0 | 58.7 |
| TraesCS7A01G369500.1 | Wheat | cytosol | 61.11 | 58.28 |
| HORVU7Hr1G085130.1 | Barley | cytosol | 62.5 | 57.69 |
| TraesCS7B01G259000.1 | Wheat | cytosol | 62.5 | 57.69 |
| Os06t0592500-01 | Rice | cytosol | 60.42 | 56.13 |
| EER89991 | Sorghum | cytosol | 59.72 | 55.48 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 50.0 | 50.7 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 49.31 | 50.0 |
| CDY39547 | Canola | cytosol | 73.61 | 49.3 |
| Zm00001d046471_P001 | Maize | nucleus, plastid | 45.83 | 41.51 |
Protein Annotations
| Gene3D:1.10.260.40 | EntrezGene:100249249 | wikigene:100249249 | MapMan:35.1 | EMBL:AM477397 | ProteinID:CAN79519 |
| ProteinID:CAN79519.1 | ProteinID:CCB51524 | ProteinID:CCB51524.1 | ncoils:Coil | InterPro:Cro/C1-type_HTH | UniProt:F6HH28 |
| EMBL:FN595756 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003713 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0043565 | InterPro:IPR001387 | EntrezGene:LOC100249249 | wikigene:LOC100249249 | InterPro:Lambda_DNA-bd_dom_sf | InterPro:MBF1_N |
| PFAM:PF01381 | PFAM:PF08523 | PFscan:PS50943 | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF71 | SMART:SM00530 |
| SUPFAM:SSF47413 | TIGR:TC66829 | UniParc:UPI00015C8532 | ArrayExpress:VIT_11s0016g04080 | EnsemblPlantsGene:VIT_11s0016g04080 | EnsemblPlants:VIT_11s0016g04080.t01 |
| unigene:Vvi.328 | RefSeq:XP_002284605 | RefSeq:XP_002284605.1 | : | : | : |
Description
No Description!
Coordinates
chr11:-:3340651..3341251
Molecular Weight (calculated)
15943.6 Da
IEP (calculated)
10.882
GRAVY (calculated)
-0.649
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNRFPGALS QDWEPVVLHK SKPKAQELRD PKAVNKAIRS GAPVQTLKKF DGGANKKAAP IMNTRKLDEG TEPAALDRVS VDVRQLIQKA RLEKKMSQAE
101: LAKLINERPQ VVQEYENGKA VPNQAVLAKM EKVLGVKLRG KISK
101: LAKLINERPQ VVQEYENGKA VPNQAVLAKM EKVLGVKLRG KISK
001: MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
Arabidopsis Description
MBF1CMBF1C [Source:UniProtKB/TrEMBL;Acc:A0A178VDH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.