Factsheet for Bra015048.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77422	Canola	cytosol	77.17	95.95
AT3G24500.1	Thale cress	cytosol	74.46	92.57
CDY39547	Canola	cytosol	95.11	81.4
VIT_11s0016g04080.t01	Wine grape	cytosol	58.7	75.0
PGSC0003DMT400076572	Potato	cytosol	53.26	67.12
Solyc01g104740.2.1	Tomato	extracellular	51.09	64.38
EER89991	Sorghum	cytosol	50.0	59.35
TraesCS7D01G353800.1	Wheat	cytosol	49.46	59.09
TraesCS7A01G369500.1	Wheat	cytosol	47.28	57.62
Os06t0592500-01	Rice	cytosol	48.37	57.42
HORVU7Hr1G085130.1	Barley	cytosol	48.37	57.05
TraesCS7B01G259000.1	Wheat	cytosol	48.37	57.05
Bra007411.1-P	Field mustard	nucleus	32.07	51.75
Bra000272.1-P	Field mustard	nucleus	38.59	50.0
Bra014559.1-P	Field mustard	nucleus	38.59	50.0
Bra004725.1-P	Field mustard	nucleus	38.59	50.0
Zm00001d046471_P001	Maize	nucleus, plastid	37.5	43.4

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	EnsemblPlantsGene:Bra015048	EnsemblPlants:Bra015048.1	EnsemblPlants:Bra015048.1-P	ncoils:Coil
InterPro:Cro/C1-type_HTH	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408	GO:GO:0009414
GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0043565	GO:GO:1903506
GO:GO:1903508	InterPro:IPR001387	InterPro:Lambda_DNA-bd_dom_sf	UniProt:M4DEX6	InterPro:MBF1_N	PFAM:PF01381
PFAM:PF08523	PFscan:PS50943	PANTHER:PTHR10245	PANTHER:PTHR10245:SF71	SMART:SM00530	SUPFAM:SSF47413
UniParc:UPI0002540C87	:	:	:	:	:

Description

AT3G24500 (E=9e-072) MBF1C, ATMBF1C | MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor

Coordinates

chrA07:-:3967560..3969190

Molecular Weight (calculated)

20280.6 Da

IEP (calculated)

10.311

GRAVY (calculated)

-0.551

Length

184 amino acids

Sequence
(BLAST)

001: MPSRYPGAVT QDWEPVVLHK TKPKSQDLRD PKAVNAALRS GLAVQTVKKF DAGSNKKGKS MAVPVINTKK LEEETEPSAM DRVKAEVRLA IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRAYPQAGE KLNAAARTNP NPHVTLLVAL DCARQSFHCT CPIE

Best Arabidopsis Sequence Match ( AT3G24500.1 )
(BLAST)

001: MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM
101: SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK

Arabidopsis Description

MBF1CMBF1C [Source:UniProtKB/TrEMBL;Acc:A0A178VDH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.