Factsheet for HORVU2Hr1G092600.4

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G389000.1	Wheat	nucleus	62.5	98.59
TraesCS2D01G386800.1	Wheat	nucleus	62.5	98.59
TraesCS2B01G407000.1	Wheat	nucleus	62.5	98.59
Os08t0366100-01	Rice	extracellular, nucleus, plasma membrane	57.59	90.85
EES14877	Sorghum	nucleus	57.14	90.14
Zm00001d032359_P002	Maize	extracellular	56.7	89.44
Zm00001d049320_P001	Maize	nucleus	56.25	88.73
KRH25792	Soybean	nucleus	52.68	83.1
KRH55727	Soybean	nucleus	51.79	81.69
KRH55726	Soybean	nucleus	51.79	81.69
CDX83520	Canola	nucleus	50.45	79.58
Bra000272.1-P	Field mustard	nucleus	50.45	79.58
CDY42821	Canola	nucleus	50.45	79.58
GSMUA_Achr1P04810_001	Banana	nucleus	50.45	79.58
VIT_19s0014g01260.t01	Wine grape	nucleus	50.0	78.87
AT2G42680.1	Thale cress	nucleus	50.0	78.87
GSMUA_Achr9P00250_001	Banana	nucleus	50.0	78.87
GSMUA_Achr1P11510_001	Banana	nucleus	50.0	78.87
AT3G58680.1	Thale cress	nucleus	49.55	78.17
CDX98319	Canola	nucleus	49.55	78.17
CDX88998	Canola	nucleus	49.55	78.17
Bra004725.1-P	Field mustard	nucleus	49.11	77.46
Bra014559.1-P	Field mustard	nucleus	49.11	77.46
CDX79844	Canola	nucleus	49.11	77.46
CDY50816	Canola	nucleus	48.66	76.76
VIT_12s0028g02020.t01	Wine grape	nucleus	48.66	76.76
Solyc10g007350.2.1	Tomato	nucleus	46.88	75.54
CDY00581	Canola	nucleus	47.77	75.35
Solyc12g014290.1.1	Tomato	nucleus	46.43	74.82
Bra007411.1-P	Field mustard	nucleus	37.95	74.56
Solyc09g055470.1.1	Tomato	nucleus	45.98	74.1
Solyc07g062400.2.1	Tomato	nucleus	45.09	72.14
CDY52458	Canola	nucleus	33.48	64.1
CDY49243	Canola	cytosol	48.21	63.91
HORVU3Hr1G029320.4	Barley	nucleus, plastid	35.27	55.24
HORVU7Hr1G085130.1	Barley	cytosol	28.12	40.38

Protein Annotations

Gene3D:1.10.260.40	MapMan:35.1	ncoils:Coil	InterPro:Cro/C1-type_HTH	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0043565	EnsemblPlantsGene:HORVU2Hr1G092600	EnsemblPlants:HORVU2Hr1G092600.4	InterPro:IPR001387
InterPro:Lambda_DNA-bd_dom_sf	UniProt:M0UK14	InterPro:MBF1_N	PFAM:PF01381	PFAM:PF08523	PFscan:PS50943
PANTHER:PTHR10245	PANTHER:PTHR10245:SF101	SMART:SM00530	SUPFAM:SSF47413	UniParc:UPI00029587D3	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:654161296..654167359

Molecular Weight (calculated)

25224.4 Da

IEP (calculated)

10.002

GRAVY (calculated)

-0.658

Length

224 amino acids

Sequence
(BLAST)

001: MKIEIQKHVR TEMLCLGIIW YSVLRIGERD NHHLRLENLS AHLQNISPLS LAPALSLAWL LVCELERPSE EICRVRPENQ GDMAGIGPLR QDWEPIVVRK
101: RAQNAADKKD EKAVNAARRS GAEIDTTKKY NAGTNKAASS GTSLNTKRLD DDTENLSHER VSSDLKKNLM QARLDKKMTQ AQLAQMINEK PQVIQEYESG
201: KAIPNNQIIG KLERALGAKL RSKK

Best Arabidopsis Sequence Match ( AT2G42680.1 )
(BLAST)

001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK

Arabidopsis Description

MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.