Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28628250
|
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G169100.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS3D01G151300.1 | Wheat | nucleus | 100.0 | 100.0 |
| KRH25792 | Soybean | nucleus | 84.51 | 84.51 |
| KRH55727 | Soybean | nucleus | 83.1 | 83.1 |
| KRH55726 | Soybean | nucleus | 82.39 | 82.39 |
| TraesCS2A01G389000.1 | Wheat | nucleus | 81.69 | 81.69 |
| CDX88998 | Canola | nucleus | 80.99 | 80.99 |
| CDY50816 | Canola | nucleus | 80.99 | 80.99 |
| Bra014559.1-P | Field mustard | nucleus | 80.28 | 80.28 |
| CDX79844 | Canola | nucleus | 80.28 | 80.28 |
| CDX83520 | Canola | nucleus | 80.28 | 80.28 |
| CDX98319 | Canola | nucleus | 80.28 | 80.28 |
| Bra004725.1-P | Field mustard | nucleus | 80.28 | 80.28 |
| CDY42821 | Canola | nucleus | 80.28 | 80.28 |
| Bra000272.1-P | Field mustard | nucleus | 80.28 | 80.28 |
| GSMUA_Achr1P04810_001 | Banana | nucleus | 80.28 | 80.28 |
| AT2G42680.1 | Thale cress | nucleus | 80.28 | 80.28 |
| CDY00581 | Canola | nucleus | 79.58 | 79.58 |
| VIT_19s0014g01260.t01 | Wine grape | nucleus | 79.58 | 79.58 |
| GSMUA_Achr1P11510_001 | Banana | nucleus | 78.17 | 78.17 |
| Solyc10g007350.2.1 | Tomato | nucleus | 76.06 | 77.7 |
| VIT_12s0028g02020.t01 | Wine grape | nucleus | 77.46 | 77.46 |
| AT3G58680.1 | Thale cress | nucleus | 77.46 | 77.46 |
| GSMUA_Achr9P00250_001 | Banana | nucleus | 76.76 | 76.76 |
| Bra007411.1-P | Field mustard | nucleus | 61.27 | 76.32 |
| Solyc09g055470.1.1 | Tomato | nucleus | 74.65 | 76.26 |
| Solyc12g014290.1.1 | Tomato | nucleus | 73.94 | 75.54 |
| Solyc07g062400.2.1 | Tomato | nucleus | 73.24 | 74.29 |
| CDY52458 | Canola | nucleus | 54.23 | 65.81 |
| CDY49243 | Canola | cytosol | 78.17 | 65.68 |
| TraesCS7A01G369500.1 | Wheat | cytosol | 45.07 | 42.38 |
| PGSC0003DMT400054878 | Potato | nucleus | 26.76 | 26.39 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G135300.1 | EnsemblPlantsGene:TraesCS3A01G135300 | Gene3D:1.10.260.40 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0043565 | InterPro:Cro/C1-type_HTH | InterPro:IPR001387 | InterPro:Lambda_DNA-bd_dom_sf | InterPro:MBF1_N |
| ncoils:Coil | PANTHER:PTHR10245 | PANTHER:PTHR10245:SF101 | PFAM:PF01381 | PFAM:PF08523 | PFscan:PS50943 |
| SMART:SM00530 | SUPFAM:SSF47413 | TIGR:cd00093 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3A:+:112947222..112949992
Molecular Weight (calculated)
15668.8 Da
IEP (calculated)
10.757
GRAVY (calculated)
-0.852
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRTGPIAQD WEPVVVRKKL PNAAAKKDEK AVNAARRAGV DIDIAKKHNA GTNKAAHSTT SLNTKRLDDD TENLAHERVP SDLKKSIMQA RTDKKLTQAQ
101: LAQLINEKPQ VIQEYESGKA IPNQQIIGKL ERALGTKLRG KK
101: LAQLINEKPQ VIQEYESGKA IPNQQIIGKL ERALGTKLRG KK
001: MAGIGPITQD WEPVVIRKKP ANAAAKRDEK TVNAARRSGA DIETVRKFNA GTNKAASSGT SLNTKMLDDD TENLTHERVP TELKKAIMQA RTDKKLTQSQ
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
101: LAQIINEKPQ VIQEYESGKA IPNQQILSKL ERALGAKLRG KK
Arabidopsis Description
MBF1AMBF1A [Source:UniProtKB/TrEMBL;Acc:A0A178VSD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.