Factsheet for PGSC0003DMT400072139

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078157	Potato	nucleus	52.86	56.92
PGSC0003DMT400060472	Potato	nucleus	78.57	53.4
TraesCSU01G121200.1	Wheat	nucleus	78.57	53.4
TraesCS6B01G100200.1	Wheat	nucleus	78.57	53.4
PGSC0003DMT400097008	Potato	nucleus	78.57	53.4
PGSC0003DMT400078156	Potato	nucleus	78.57	53.4
PGSC0003DMT400078155	Potato	nucleus	78.57	53.4
PGSC0003DMT400078154	Potato	nucleus	78.57	53.4
PGSC0003DMT400071314	Potato	nucleus	78.57	53.4
PGSC0003DMT400060471	Potato	nucleus	78.57	53.4
PGSC0003DMT400040182	Potato	nucleus	78.57	53.4
PGSC0003DMT400040121	Potato	nucleus	78.57	53.4
PGSC0003DMT400022438	Potato	nucleus	78.57	53.4
PGSC0003DMT400007674	Potato	nucleus	78.57	53.4
PGSC0003DMT400001072	Potato	nucleus	78.57	53.4
KRH67535	Soybean	nucleus	78.57	53.4
KRH30348	Soybean	nucleus	78.57	53.4
TraesCS2D01G469600.1	Wheat	nucleus	71.43	50.51
HORVU1Hr1G071190.2	Barley	nucleus, plastid	77.14	36.99

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	UniProt:M1CPS3	EnsemblPlantsGene:PGSC0003DMG400028071
PGSC:PGSC0003DMG400028071	EnsemblPlants:PGSC0003DMT400072139	PRINTS:PR00623	ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160
SUPFAM:SSF47113	UniParc:UPI000294D1FD	SEG:seg	:	:	:

Description

Histone H4 [Source:PGSC_GENE;Acc:PGSC0003DMG400028071]

Coordinates

chr9:+:33132866..33133176

Molecular Weight (calculated)

8014.0 Da

IEP (calculated)

12.385

GRAVY (calculated)

-0.910

Length

70 amino acids

Sequence
(BLAST)

1: MSGRVKGGKG LGKRGAKRHR KVLRDNIQGI KNPSIRRLAR REYDRRNMVT VMDVVNSLKR QGMTLYKFGG

Best Arabidopsis Sequence Match ( AT1G07660.1 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.