Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71090 | Canola | nucleus | 58.46 | 95.0 |
| Solyc09g007590.1.1 | Tomato | nucleus | 75.38 | 71.01 |
| Solyc09g007610.1.1 | Tomato | nucleus | 73.85 | 69.57 |
| TraesCSU01G121200.1 | Wheat | nucleus | 93.85 | 59.22 |
| TraesCS6B01G100200.1 | Wheat | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400097008 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400078156 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400078155 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400078154 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400071314 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400060472 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400060471 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400040182 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400040121 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400022438 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400007674 | Potato | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400001072 | Potato | nucleus | 93.85 | 59.22 |
| KRH67535 | Soybean | nucleus | 93.85 | 59.22 |
| KRH30348 | Soybean | nucleus | 93.85 | 59.22 |
| PGSC0003DMT400072139 | Potato | mitochondrion | 56.92 | 52.86 |
| Zm00001d013727_P001 | Maize | cytosol, mitochondrion, nucleus | 87.69 | 50.0 |
| Zm00001d012668_P001 | Maize | nucleus | 89.23 | 47.54 |
| HORVU1Hr1G080200.2 | Barley | plastid | 95.38 | 34.64 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H4 | InterPro:Histone_H4_CS | InterPro:IPR009072 | UniProt:M1CZH9 | EnsemblPlantsGene:PGSC0003DMG400030402 |
| PGSC:PGSC0003DMG400030402 | EnsemblPlants:PGSC0003DMT400078157 | PRINTS:PR00623 | ScanProsite:PS00047 | PANTHER:PTHR10484 | PANTHER:PTHR10484:SF160 |
| SUPFAM:SSF47113 | UniParc:UPI0002951EE2 | SEG:seg | : | : | : |
Description
Histone H4 [Source:PGSC_GENE;Acc:PGSC0003DMG400030402]
Coordinates
chr6:-:56477428..56477965
Molecular Weight (calculated)
7244.2 Da
IEP (calculated)
12.600
GRAVY (calculated)
-0.658
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFWRM
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.