Factsheet for Solyc01g007340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g039820.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	14.0	86.59
Solyc01g017200.1.1	Tomato	cytosol	18.74	84.07
Solyc09g091410.1.1	Tomato	cytosol	26.63	81.82
Solyc04g039830.1.1	Tomato	cytosol	33.33	81.25
GSMUA_Achr10P...	Banana	cytosol	11.05	80.0

Protein Annotations

KEGG:00061+6.4.1.2	KEGG:00254+6.4.1.2	KEGG:00620+6.4.1.2	KEGG:00640+6.4.1.2	KEGG:00720+6.4.1.2	Gene3D:3.90.226.10
MapMan:5.1.3.2.2	UniProt:A0A0C5CEC8	ProteinID:AJO25121.1	ProteinID:ASR92428.1	InterPro:AcCoA_carboxyl	InterPro:Acetyl_CoA_COase_Trfase_b_su
InterPro:COA_CT_N	InterPro:ClpP/crotonase-like_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003989
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009317	GO:GO:0009507	GO:GO:0009509	GO:GO:0009536	GO:GO:0009570
GO:GO:0009575	GO:GO:0009987	GO:GO:0016740	GO:GO:0016743	GO:GO:0016874	GO:GO:0046872
GO:GO:2001295	InterPro:IPR011762	HAMAP:MF_01395	PFAM:PF01039	PRINTS:PR01070	PFscan:PS50980
PANTHER:PTHR42995	PANTHER:PTHR42995:SF3	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc01g007340.2	EnsemblPlants:Solyc01g007340.2.1	TIGRFAMs:TIGR00515
UniParc:UPI000067D9D9	SEG:seg	:	:	:	:

Description

Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A0C5CEC8]

Coordinates

chr1:+:1854314..1856231

Molecular Weight (calculated)

57690.1 Da

IEP (calculated)

5.130

GRAVY (calculated)

-0.403

Length

507 amino acids

Sequence
(BLAST)

001: MTIHLLYFHA NRGQENSMER WWFNSMLFKK EFERRCGLNK SMGSLGPIEN TSEDPNLKVK NIHSCSNVDY LFGVKDIWNF ISNDTFLVSD RNGDSYSIYF
101: DIENHIFEVD NDHSFLSELE SSFYSYRNSS YLNNGFRGED PYYNSYMSYM YDTQYSWNNH INSCIDNYLQ SQICIDTSII SGSESNGDSY IYRAICSGQS
201: LNSSENEGSS RRTRTKDSDL TIRESSNDLE VTQKYKHLWV QCENCYGLNY KKFLKSKMNI CEQCGYHLKM SSSDRIELLI DPGTWDPMDE DMVSLDPIEF
301: HSEEEPYKDR IDSYQRKTGL TEAVQTGIGQ LNGIPVAIGV MDFQFMGGSM GSVVGEKITR LIEHAANQNL PLMIVCASGG ARMQEGSLSL MQMAKISSAL
401: YDYQLNKKLF YVSILTSPTT GGVTASFGML GDIIIAEPNA YIAFAGKRVI EQTLNKTVPE GSQAAEYLFQ KGLFDLIVPR NLLKSVLSEL FKLHAFFPLN
501: QKSSKIK

Best Arabidopsis Sequence Match ( ATCG00500.1 )
(BLAST)

001: MEKSWFNFMF SKGELEYRGE LSKAMDSFAP GEKTTISQDR FIYDMDKNFY GWDERSSYSS SYSNNVDLLV SSKDIRNFIS DDTFFVRDSN KNSYSIFFDK
101: KKKIFEIDND FSDLEKFFYS YCSSSYLNNR SKGDNDLHYD PYIKDTKYNC TNHINSCIDS YFRSYICIDN NFLIDSNNFN ESYIYNFICS ESGKIRESKN
201: YKIRTNRNRS NLISSKDFDI TQNYNQLWIQ CDNCYGLMYK KVKMNVCEQC GHYLKMSSSE RIELSIDPGT WNPMDEDMVS ADPIKFHSKE EPYKNRIDSA
301: QKTTGLTDAV QTGTGQLNGI PVALGVMDFR FMGGSMGSVV GEKITRLIEY ATNQCLPLIL VCSSGGARMQ EGSLSLMQMA KISSVLCDYQ SSKKLFYISI
401: LTSPTTGGVT ASFGMLGDII IAEPYAYIAF AGKRVIEQTL KKAVPEGSQA AESLLRKGLL DAIVPRNLLK GVLSELFQLH AFFPLNTN

Arabidopsis Description

ACCDAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4V3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.