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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid, secretory
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana cytosol 63.41 74.29
Solyc01g007340.2.1 Tomato plastid 86.59 14.0
CDX81526 Canola cytosol 3.66 3.12
Solyc09g091410.1.1 Tomato cytosol 3.66 1.82
Solyc01g017200.1.1 Tomato cytosol 0.0 0.0
Solyc04g039830.1.1 Tomato cytosol 0.0 0.0
Protein Annotations
KEGG:00061+6.4.1.2KEGG:00254+6.4.1.2KEGG:00620+6.4.1.2KEGG:00640+6.4.1.2KEGG:00720+6.4.1.2Gene3D:3.90.226.10
MapMan:35.1InterPro:Acetyl_CoA_COase_Trfase_b_suInterPro:COA_CT_NInterPro:ClpP/crotonase-like_dom_sfGO:GO:0003674GO:GO:0003824
GO:GO:0003989GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006629
GO:GO:0006633GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009317GO:GO:0009987
InterPro:IPR011762UniProt:K4BRC0PRINTS:PR01070PFscan:PS50980PANTHER:PTHR42995PANTHER:PTHR42995:SF3
SUPFAM:SSF52096EnsemblPlantsGene:Solyc04g039820.1EnsemblPlants:Solyc04g039820.1.1TMHMM:TMhelixUniParc:UPI000276600E:
Description
No Description!
Coordinates
chr4:+:12535436..12535684
Molecular Weight (calculated)
8929.0 Da
IEP (calculated)
10.070
GRAVY (calculated)
0.189
Length
82 amino acids
Sequence
(BLAST)
1: MQKGSLSLMQ MAKISSALYD YQFNKKLFYV SILTSLTTGG VTTNFVMLGD IIVAEPNAYI AFAGKRVIEQ TLNKTVPKGS SS
Best Arabidopsis Sequence Match ( ATCG00500.1 )
(BLAST)
001: MEKSWFNFMF SKGELEYRGE LSKAMDSFAP GEKTTISQDR FIYDMDKNFY GWDERSSYSS SYSNNVDLLV SSKDIRNFIS DDTFFVRDSN KNSYSIFFDK
101: KKKIFEIDND FSDLEKFFYS YCSSSYLNNR SKGDNDLHYD PYIKDTKYNC TNHINSCIDS YFRSYICIDN NFLIDSNNFN ESYIYNFICS ESGKIRESKN
201: YKIRTNRNRS NLISSKDFDI TQNYNQLWIQ CDNCYGLMYK KVKMNVCEQC GHYLKMSSSE RIELSIDPGT WNPMDEDMVS ADPIKFHSKE EPYKNRIDSA
301: QKTTGLTDAV QTGTGQLNGI PVALGVMDFR FMGGSMGSVV GEKITRLIEY ATNQCLPLIL VCSSGGARMQ EGSLSLMQMA KISSVLCDYQ SSKKLFYISI
401: LTSPTTGGVT ASFGMLGDII IAEPYAYIAF AGKRVIEQTL KKAVPEGSQA AESLLRKGLL DAIVPRNLLK GVLSELFQLH AFFPLNTN
Arabidopsis Description
ACCDAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4V3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.