Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074860.1.1 | Tomato | mitochondrion | 2.24 | 5.26 |
Protein Annotations
| MapMan:13.3.5.1.4 | GO:GO:0000798 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006302 |
| GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007062 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | UniProt:K4C9K3 | PANTHER:PTHR12585 | PANTHER:PTHR12585:SF26 | EnsemblPlantsGene:Solyc06g074870.1 | EnsemblPlants:Solyc06g074870.1.1 |
| UniParc:UPI000276679B | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:46392431..46394981
Molecular Weight (calculated)
45378.9 Da
IEP (calculated)
6.001
GRAVY (calculated)
-1.047
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVQLNLRMF NVQRLDNADL YDKPNAQEEP AKDLHQVDPD NITLAERFES HHTDMFNHFE RFDIEGDEET QMNYTQPEDA QIPSTPVQSP PREQAHQPDE
101: IPDRHPEDQV KQQSDEVKEA FEQRQDQQRP KPARRRTRKA TSLAIDHEQT IISGDIYQSW LQSSSDIASR KRKKRKTLSV LPSMKIARMM EMPPIALLEG
201: LFTNGNKEVH YPAPLLKLWM RNTQPPHDSP SGKTSPPFPP EPSYTSPGER MGNLEPPFEY FQGGVGSPAV GISIEKQRAN LNNNKIPPEI LMEDLRTNLT
301: NMGLHPTETN GVKETDHMAT PGSGDEPRSI PSSGSGHGLL SQNSVTDSSR SNKKRPHSSL KHSGNGLQPV AEENPWHDPT LNFKLTRLSE LSENGFTQDN
401: GS
101: IPDRHPEDQV KQQSDEVKEA FEQRQDQQRP KPARRRTRKA TSLAIDHEQT IISGDIYQSW LQSSSDIASR KRKKRKTLSV LPSMKIARMM EMPPIALLEG
201: LFTNGNKEVH YPAPLLKLWM RNTQPPHDSP SGKTSPPFPP EPSYTSPGER MGNLEPPFEY FQGGVGSPAV GISIEKQRAN LNNNKIPPEI LMEDLRTNLT
301: NMGLHPTETN GVKETDHMAT PGSGDEPRSI PSSGSGHGLL SQNSVTDSSR SNKKRPHSSL KHSGNGLQPV AEENPWHDPT LNFKLTRLSE LSENGFTQDN
401: GS
001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.