Factsheet for Solyc06g074860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0580500-01	Rice	extracellular, nucleus	22.22	53.52
Zm00001d039132_P001	Maize	cytosol, nucleus, plastid	47.95	30.26
KRH14918	Soybean	mitochondrion	64.33	18.39
KRH73270	Soybean	mitochondrion, nucleus	64.91	18.23
TraesCS1A01G420000.1	Wheat	mitochondrion	60.23	16.94
TraesCS1D01G427800.1	Wheat	mitochondrion	60.23	16.94
KXG22609	Sorghum	mitochondrion	59.06	16.67
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	56.14	15.58
VIT_13s0067g01660.t01	Wine grape	mitochondrion	55.56	15.47
CDY38417	Canola	extracellular, nucleus, plastid	28.07	15.43
TraesCS1B01G450400.3	Wheat	mitochondrion	60.82	15.23
CDX70148	Canola	nucleus	57.89	15.21
AT5G05490.1	Thale cress	cytosol	54.97	14.99
HORVU1Hr1G062190.10	Barley	plastid	55.56	14.82
GSMUA_Achr5P28090_001	Banana	mitochondrion	51.46	14.55
CDX78861	Canola	nucleus	30.41	14.53
Bra009115.1-P	Field mustard	nucleus	50.88	14.17
Bra013315.1-P	Field mustard	cytosol, nucleus, plasma membrane	32.16	13.48
CDX98845	Canola	nucleus	56.73	8.32
Zm00001d039133_P001	Maize	nucleus	8.19	2.58
Solyc06g074870.1.1	Tomato	nucleus	5.26	2.24

Protein Annotations

EnsemblPlants:Solyc06g074860.1.1	EnsemblPlantsGene:Solyc06g074860.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Rad21_Rec8_N
PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	PFAM:PF04825	SEG:seg	UniParc:UPI000276679A	UniProt:K4C9K2
MapMan:13.3.5.1.3	MapMan:13.3.5.1.4	:	:	:	:

Description

No Description!

Coordinates

chr6:+:46390295..46392135

Molecular Weight (calculated)

19641.3 Da

IEP (calculated)

9.920

GRAVY (calculated)

-0.263

Length

171 amino acids

Sequence
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATLHSKLNRK KLSKLNIINI CEQILNPSVP MALRLSGILM GGVVIVYEHK VKLLYEDVTR LMVQINEAWK VKAATDPTLL
101: PKGKSQAKYA AITLPENREE ELPEIEQTLR NPDTVTMMDF EQTSYFTMVH YGKLCHLLNP RNNFKSRNKN C

Best Arabidopsis Sequence Match ( AT5G05490.2 )
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.