Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70148 | Canola | nucleus | 99.02 | 93.39 |
| AT5G05490.1 | Thale cress | cytosol | 65.47 | 64.11 |
| Solyc06g074860.1.1 | Tomato | mitochondrion | 14.17 | 50.88 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 5.86 | 50.7 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 21.17 | 47.97 |
| KRH14918 | Soybean | mitochondrion | 40.07 | 41.14 |
| KRH73270 | Soybean | mitochondrion, nucleus | 39.74 | 40.07 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 39.25 | 39.25 |
| KXG22609 | Sorghum | mitochondrion | 37.95 | 38.45 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 37.62 | 37.99 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 37.46 | 37.83 |
| GSMUA_Achr5P28090_001 | Banana | mitochondrion | 37.13 | 37.69 |
| HORVU1Hr1G091650.6 | Barley | cytosol, mitochondrion, nucleus | 35.99 | 35.88 |
| HORVU1Hr1G062190.10 | Barley | plastid | 36.65 | 35.1 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 37.46 | 33.67 |
| Zm00001d039133_P001 | Maize | nucleus | 21.01 | 23.76 |
| Bra013315.1-P | Field mustard | cytosol, nucleus, plasma membrane | 11.07 | 16.67 |
Protein Annotations
| MapMan:13.3.5.1.4 | EnsemblPlantsGene:Bra009115 | EnsemblPlants:Bra009115.1 | EnsemblPlants:Bra009115.1-P | GO:GO:0000003 | GO:GO:0000228 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0007049 | GO:GO:0007062 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010032 | GO:GO:0016043 | GO:GO:0051276 | GO:GO:0051455 | GO:GO:0051754 | UniProt:M4CY18 |
| PFAM:PF04824 | PFAM:PF04825 | PANTHER:PTHR12585 | PANTHER:PTHR12585:SF26 | InterPro:Rad21/Rec8_C_eu | InterPro:Rad21_Rec8_N |
| SUPFAM:SSF46785 | UniParc:UPI0002544C43 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
AT5G05490 (E=4e-253) SYN1, ATREC8, REC8 | SYN1 (SYNAPTIC 1)
Coordinates
chrA10:+:15297519..15302290
Molecular Weight (calculated)
69295.3 Da
IEP (calculated)
6.156
GRAVY (calculated)
-0.796
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIFRAFDYP MQSYGERMAA TLHAKINRKK LNKLDIIQIC EEILNPSVPM ALRLSGILMG GVVIVYERKV KLLFDDVTRL LVEINGAWRT KAAPDPTLLP
101: KGRTHARKEA VTLPDKDEAD FGDFEQTRSQ LPKFPNFMDF QQSYISMRLD EPNVNDIPEQ EDLHQAAAEN ITLFEYHASY QTNTETYDRF ERFDIEGDDE
201: TQLNFNPREG SQIPPTLIPS PPRHHDFPEG GNPTSPQRQE QQENGRDAFA EQTAEQNIPD REDQDVPRPT KRRARRTATS AMDCEQTIIA GNQYQSWLQD
301: TSHILLRGKK RKARGPASPS IEVTKRMKLP VTQLFEEHVD GSYPPQLMEL WSKCTQPLQT STSETGRPDL SAEHSPGFGQ ERMQDHHQTD HHQGTETSFQ
401: NLGSPAERLR NVLAEKDGSI EGLMARSRAS AENNNQAAAD ISVTPLYSGD DVRSMPSTPS ARGAASINIE INSNSRRLNR KRQHSSPRRG LEPVAEDRTW
501: EHRAYDFEFS MIPEKGFTAD NEVLAETGPT QTQKPVTTHT DEKITDSIKS HLKTHFETPG APQVESLNKL AIGMKRNAAA QLFYQSCVLA TRGVIKVEQT
601: QPYGDILIAR GPNM
101: KGRTHARKEA VTLPDKDEAD FGDFEQTRSQ LPKFPNFMDF QQSYISMRLD EPNVNDIPEQ EDLHQAAAEN ITLFEYHASY QTNTETYDRF ERFDIEGDDE
201: TQLNFNPREG SQIPPTLIPS PPRHHDFPEG GNPTSPQRQE QQENGRDAFA EQTAEQNIPD REDQDVPRPT KRRARRTATS AMDCEQTIIA GNQYQSWLQD
301: TSHILLRGKK RKARGPASPS IEVTKRMKLP VTQLFEEHVD GSYPPQLMEL WSKCTQPLQT STSETGRPDL SAEHSPGFGQ ERMQDHHQTD HHQGTETSFQ
401: NLGSPAERLR NVLAEKDGSI EGLMARSRAS AENNNQAAAD ISVTPLYSGD DVRSMPSTPS ARGAASINIE INSNSRRLNR KRQHSSPRRG LEPVAEDRTW
501: EHRAYDFEFS MIPEKGFTAD NEVLAETGPT QTQKPVTTHT DEKITDSIKS HLKTHFETPG APQVESLNKL AIGMKRNAAA QLFYQSCVLA TRGVIKVEQT
601: QPYGDILIAR GPNM
001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.