Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009115.1-P | Field mustard | nucleus | 93.39 | 99.02 |
| AT5G05490.1 | Thale cress | cytosol | 66.05 | 68.58 |
| Solyc06g074860.1.1 | Tomato | mitochondrion | 15.21 | 57.89 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 5.84 | 53.52 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 19.97 | 47.97 |
| CDX98845 | Canola | nucleus | 84.33 | 47.08 |
| KRH14918 | Soybean | mitochondrion | 39.48 | 42.98 |
| KRH73270 | Soybean | mitochondrion, nucleus | 39.17 | 41.87 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 38.56 | 40.88 |
| KXG22609 | Sorghum | mitochondrion | 37.48 | 40.26 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 37.33 | 39.97 |
| GSMUA_Achr5P28090_001 | Banana | mitochondrion | 37.02 | 39.83 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 37.17 | 39.8 |
| HORVU1Hr1G091650.6 | Barley | cytosol, mitochondrion, nucleus | 35.79 | 37.82 |
| HORVU1Hr1G062190.10 | Barley | plastid | 36.56 | 37.13 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 37.17 | 35.43 |
| Zm00001d039133_P001 | Maize | nucleus | 19.82 | 23.76 |
| CDY38417 | Canola | extracellular, nucleus, plastid | 11.21 | 23.47 |
| CDX78861 | Canola | nucleus | 10.6 | 19.27 |
Protein Annotations
| MapMan:13.3.5.1.4 | GO:A0A078C597 | EnsemblPlants:CDX70148 | ProteinID:CDX70148 | ProteinID:CDX70148.1 | GO:GO:0000228 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00136259001 | PFAM:PF04824 | PFAM:PF04825 | PANTHER:PTHR12585 | PANTHER:PTHR12585:SF26 |
| InterPro:Rad21/Rec8_C_eu | InterPro:Rad21_Rec8_N | SUPFAM:SSF46785 | UniParc:UPI0004EEFFCA | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
BnaA10g24970DSister chromatid cohesion 1 protein 1 [Source:Projected from Arabidopsis thaliana (AT5G05490) UniProtKB/Swiss-Prot;Acc:Q9S7T7]
Coordinates
chrLK031790:-:3319299..3324097
Molecular Weight (calculated)
73151.1 Da
IEP (calculated)
6.343
GRAVY (calculated)
-0.726
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIFRAFDYP MQSYGERTGG SVEQIGALRL QSLIATVWGP ATLLARKAPL GQIWMAATLH AKINRKKLNK LDIIQICEEI LNPSVPMALR LSGILMGGVV
101: IVYERKVKLL FDDVTRLLVE INGAWRTKAA PDPTLLPKGR THARKEAVTL PDKDEADFGD FEQTRSQLPK FPNFMDFQQS YISMRLDEPN VNDIPEQEDL
201: HQAAAENITL FEYHASYQTN TETYDRFERF DIEGDDETQL NFNPREGSQI PPTLIPSPPR HHDFPEGGNP TSPQRQEQQE NGRDAFAEQT AEQNIPDRED
301: QDVPRPTKRR ARRTATSAMD CEQTIIAGNQ YQSWLQDTSH ILLRGKKRKA RGPASPSIEV TKRMKLPVTQ LFEEHVDGSY PPQLMELWSK CTQPLQTSTS
401: ETGRPDLSAE HSPGFGQERM QDHHQTDHHQ GTETSFQNLG SPAERLRNVL AEKDGSIEGL MARSRASAEN NNQAAADISV TPLYSGDDVR SMPSTPSARG
501: AASINIEINS NSRRLNRKRQ HSSPRRGLEP VAEDRTWEHR AYDFEFSMIP EKGFTADNEV LAETGPTQTQ KPVTTHTDEK ITDSIKSHLK THFETPGAPQ
601: VESLNKLAIG MKRNAAAQLF YQSCVLATRG VIKVEQTQPY GDILIARGPN M
101: IVYERKVKLL FDDVTRLLVE INGAWRTKAA PDPTLLPKGR THARKEAVTL PDKDEADFGD FEQTRSQLPK FPNFMDFQQS YISMRLDEPN VNDIPEQEDL
201: HQAAAENITL FEYHASYQTN TETYDRFERF DIEGDDETQL NFNPREGSQI PPTLIPSPPR HHDFPEGGNP TSPQRQEQQE NGRDAFAEQT AEQNIPDRED
301: QDVPRPTKRR ARRTATSAMD CEQTIIAGNQ YQSWLQDTSH ILLRGKKRKA RGPASPSIEV TKRMKLPVTQ LFEEHVDGSY PPQLMELWSK CTQPLQTSTS
401: ETGRPDLSAE HSPGFGQERM QDHHQTDHHQ GTETSFQNLG SPAERLRNVL AEKDGSIEGL MARSRASAEN NNQAAADISV TPLYSGDDVR SMPSTPSARG
501: AASINIEINS NSRRLNRKRQ HSSPRRGLEP VAEDRTWEHR AYDFEFSMIP EKGFTADNEV LAETGPTQTQ KPVTTHTDEK ITDSIKSHLK THFETPGAPQ
601: VESLNKLAIG MKRNAAAQLF YQSCVLATRG VIKVEQTQPY GDILIARGPN M
001: MLRLESLIVT VWGPATLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR
101: TKSVPDPTLL PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET
201: YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ
301: TIIAGHVYQS WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ
401: TDHHERSDTS SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP
501: RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC
601: VLATRGVIKV NQAEPYGDIL IARGPNM
101: TKSVPDPTLL PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET
201: YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ
301: TIIAGHVYQS WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ
401: TDHHERSDTS SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP
501: RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC
601: VLATRGVIKV NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.