CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plastid
Any Predictor:	extracellular, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074860.1.1	Tomato	mitochondrion	15.43	28.07
Os05t0580500-01	Rice	extracellular, nucleus	5.47	23.94
Zm00001d039132_P001	Maize	cytosol, nucleus, plastid	15.43	17.71
CDX78861	Canola	nucleus	14.79	12.85
TraesCS1D01G427800.1	Wheat	mitochondrion	24.76	12.66
TraesCS1A01G420000.1	Wheat	mitochondrion	24.44	12.5
AT5G05490.1	Thale cress	cytosol	24.44	12.12
KXG22609	Sorghum	mitochondrion	22.51	11.55
KRH14918	Soybean	mitochondrion	21.86	11.37
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	22.51	11.36
KRH73270	Soybean	mitochondrion, nucleus	22.19	11.33
GSMUA_Achr5P28090_001	Banana	mitochondrion	21.86	11.24
HORVU1Hr1G062190.10	Barley	plastid	23.15	11.23
CDX70148	Canola	nucleus	23.47	11.21
TraesCS1B01G450400.3	Wheat	mitochondrion	24.12	10.98
VIT_13s0067g01660.t01	Wine grape	mitochondrion	19.61	9.93
CDX98845	Canola	nucleus	24.12	6.43
Zm00001d039133_P001	Maize	nucleus	8.04	4.6

Protein Annotations

EnsemblPlants:CDY38417	EnsemblPlantsGene:GSBRNA2T00065851001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Rad21_Rec8_N
PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	PFAM:PF04825	ProteinID:CDY38417	ProteinID:CDY38417.1	SEG:seg
UniParc:UPI0004EDFB77	UniProt:A0A078HKL2	MapMan:35.1	:	:	:

Description

BnaC01g10260DBnaC01g10260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKL2]

Coordinates

chrLK032423:+:274953..287216

Molecular Weight (calculated)

34657.0 Da

IEP (calculated)

11.225

GRAVY (calculated)

-0.366

Length

311 amino acids

Sequence
(BLAST)

001: MKNGVVSVLY LTKILSDAKL RRERQALEKN TRTFRIVKTV GSVGALRLQS LLVTVWGPAT LVGKAPLAQI WMAATLHAKN NGKKVDNLGI IQIVGMKILN
101: PSVPMALRLF SSSELNMFSY SHSVLMLLVV VYNSLFEEGK KDFETDLIST KGLLPIGRTH ARKGAVKLSE NSEADFGSIV YVSATLFSSS SQNLYSLSPL
201: PFSPTHSPKL RRRCSHYELP INSTRLPAQT KPSHRHFGVD RHRQKRPSRS SSSFHGRPLR HDVVSRHAQR HSPEPSLPSS IRENYHRALP RPRHRCGNGI
301: AIDDGCESNG R

Best Arabidopsis Sequence Match ( AT5G05490.1 )
(BLAST)

001: MLRLESLIVT VWGPATLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR
101: TKSVPDPTLL PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET
201: YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ
301: TIIAGHVYQS WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ
401: TDHHERSDTS SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP
501: RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC
601: VLATRGVIKV NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.