Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 5
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074860.1.1 | Tomato | mitochondrion | 14.55 | 51.46 |
| KXG22609 | Sorghum | mitochondrion | 51.07 | 50.99 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 49.75 | 49.51 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 49.59 | 49.34 |
| HORVU1Hr1G091650.6 | Barley | cytosol, mitochondrion, nucleus | 47.93 | 47.08 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 20.83 | 46.49 |
| HORVU1Hr1G062190.10 | Barley | plastid | 48.26 | 45.55 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 5.29 | 45.07 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 49.09 | 43.48 |
| KRH14918 | Soybean | mitochondrion | 40.99 | 41.47 |
| KRH73270 | Soybean | mitochondrion, nucleus | 41.16 | 40.89 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 41.32 | 40.72 |
| AT5G05490.1 | Thale cress | cytosol | 39.83 | 38.44 |
| Bra009115.1-P | Field mustard | nucleus | 37.69 | 37.13 |
| CDX70148 | Canola | nucleus | 39.83 | 37.02 |
| Zm00001d039133_P001 | Maize | nucleus | 32.89 | 36.65 |
| CDY38417 | Canola | extracellular, nucleus, plastid | 11.24 | 21.86 |
| CDX98845 | Canola | nucleus | 38.84 | 20.15 |
| CDX78861 | Canola | nucleus | 9.09 | 15.36 |
| Bra013315.1-P | Field mustard | cytosol, nucleus, plasma membrane | 9.59 | 14.22 |
Protein Annotations
| MapMan:13.3.5.1.4 | GO:GO:0000003 | GO:GO:0000228 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0007049 |
| GO:GO:0007062 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010032 | GO:GO:0016043 | GO:GO:0051276 |
| GO:GO:0051455 | GO:GO:0051754 | EnsemblPlantsGene:GSMUA_Achr5G28090_001 | EnsemblPlants:GSMUA_Achr5P28090_001 | EnsemblPlants:GSMUA_Achr5T28090_001 | UniProt:M0T2D3 |
| PFAM:PF04824 | PFAM:PF04825 | PANTHER:PTHR12585 | PANTHER:PTHR12585:SF26 | InterPro:Rad21/Rec8_C_eu | InterPro:Rad21_Rec8_N |
| SUPFAM:SSF46785 | UniParc:UPI0002956B73 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
Putative Sister chromatid cohesion 1 protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G28090_001]
Coordinates
chr5:+:28434225..28438669
Molecular Weight (calculated)
68770.8 Da
IEP (calculated)
5.755
GRAVY (calculated)
-0.570
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: MFYSHQLLAR KAPLGQIWMA ATMRAKMNRR KLDKLDIIKI CEEILNPSVP MALRLSGILM GKRRRDRLRE EGQAPLWFVL SNDVTRFLVE INAAWKVKTV
101: SDPTVLPRAK AQAKFEAVTL PEYVDMEPEQ PMMFPDASIA TAAFQRMRLD DLEEHYINID LRDDDLAGND HQAEPENITL FETFGSGVAE TDLYNHFERF
201: DVGDDETHIN FTPQEEPQFE ATLIPSLPHE DEIRTFTHLR NLLKSFFAVE NHQTEEKEEQ RANDEDVQRQ QPVKRKAHRK PSHRIMDDRQ LMIPGNIYQL
301: WLQDTSDIVS KRGRTQCLRS VNPIRSTKIS NLMDLPPVAL ISGLEMFPAK VHYPSPLMEL WRKCTEVNIS PSGDKSPPAQ QREVTETVKL LEEVQGEIGS
401: NSLDVSIEKL RANLENLDFQ GFDDAFSMDH FVTPGSSAGQ SSKSMPSSGS GHAFMPLEPE IQLPSVRSKR KQHSSSKSFR NLDPVEEELP LQQDVRGSKI
501: RRLSETGPTP DFELEETGPT QTPVTPPSNP AVDNTTLLIR THLKLHFDTP GAPQSESLNQ LAFGMYKRKA AQLFYQTCVL VTCDFIKVQQ HEAYGDISIS
601: RGPKM
101: SDPTVLPRAK AQAKFEAVTL PEYVDMEPEQ PMMFPDASIA TAAFQRMRLD DLEEHYINID LRDDDLAGND HQAEPENITL FETFGSGVAE TDLYNHFERF
201: DVGDDETHIN FTPQEEPQFE ATLIPSLPHE DEIRTFTHLR NLLKSFFAVE NHQTEEKEEQ RANDEDVQRQ QPVKRKAHRK PSHRIMDDRQ LMIPGNIYQL
301: WLQDTSDIVS KRGRTQCLRS VNPIRSTKIS NLMDLPPVAL ISGLEMFPAK VHYPSPLMEL WRKCTEVNIS PSGDKSPPAQ QREVTETVKL LEEVQGEIGS
401: NSLDVSIEKL RANLENLDFQ GFDDAFSMDH FVTPGSSAGQ SSKSMPSSGS GHAFMPLEPE IQLPSVRSKR KQHSSSKSFR NLDPVEEELP LQQDVRGSKI
501: RRLSETGPTP DFELEETGPT QTPVTPPSNP AVDNTTLLIR THLKLHFDTP GAPQSESLNQ LAFGMYKRKA AQLFYQTCVL VTCDFIKVQQ HEAYGDISIS
601: RGPKM
001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.