CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14918	Soybean	mitochondrion	91.95	93.65
Solyc06g074860.1.1	Tomato	mitochondrion	18.23	64.91
Os05t0580500-01	Rice	extracellular, nucleus	6.9	59.15
Zm00001d039132_P001	Maize	cytosol, nucleus, plastid	21.02	47.23
VIT_13s0067g01660.t01	Wine grape	mitochondrion	46.31	45.93
KXG22609	Sorghum	mitochondrion	41.54	41.75
GSMUA_Achr5P28090_001	Banana	mitochondrion	40.89	41.16
TraesCS1D01G427800.1	Wheat	mitochondrion	40.39	40.46
TraesCS1A01G420000.1	Wheat	mitochondrion	40.07	40.13
Bra009115.1-P	Field mustard	nucleus	40.07	39.74
CDX70148	Canola	nucleus	41.87	39.17
AT5G05490.1	Thale cress	cytosol	40.23	39.08
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	38.59	38.15
HORVU1Hr1G062190.10	Barley	plastid	38.92	36.97
TraesCS1B01G450400.3	Wheat	mitochondrion	39.9	35.58
Zm00001d039133_P001	Maize	nucleus	22.0	24.68
CDY38417	Canola	extracellular, nucleus, plastid	11.33	22.19
CDX98845	Canola	nucleus	39.08	20.41
CDX78861	Canola	nucleus	9.69	16.48
Bra013315.1-P	Field mustard	cytosol, nucleus, plasma membrane	10.18	15.2

Protein Annotations

EntrezGene:100791405	MapMan:13.3.5.1.4	EMBL:ACUP02001273	EnsemblPlantsGene:GLYMA_02G263700	GO:GO:0000228	GO:GO:0000798
GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006302	GO:GO:0006950
GO:GO:0007049	GO:GO:0007062	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
UniProt:K7KAW5	EnsemblPlants:KRH73270	ProteinID:KRH73270	ProteinID:KRH73270.1	PFAM:PF04824	PFAM:PF04825
PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	InterPro:Rad21/Rec8_C_eu	InterPro:Rad21_Rec8_N	SUPFAM:SSF46785	UniParc:UPI000296E220
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:44913033..44918409

Molecular Weight (calculated)

68242.5 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.608

Length

609 amino acids

Sequence
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATMHAKINRR KLDKLNIINI CEEILNPSIP MALRLSGILM GGVVIVYERK VKLLYDDVTR FLVEINEAWK VKAAPDPTLL
101: PKSKSKAKKE AVTLPGTGET NVADIEQSLQ FSNTGTTNGF QHNAYFTMRL DSVDEPFISN GAREDQDQSE LLHQVDAENI TLFERFETFQ ANADPYNHLL
201: FERFERFDIE GDEETQVNVT SADQIPTTLV PSPPHQDEPT RADTFQDHHP GHPDIQQPSE GMIPRQEPKR RGPNKRKRGQ PSTIEMDYEQ TIIPAHIYQH
301: WLQNASDIVS RRGRKKKLTD VMSSTKIANL MKLPPVVLIG DLFTAENDNI YYPKAIMDLW IKSIQPPHDS PSERISAHHP PEPSFSSPPG VQNEDFMQFP
401: SEDFDSRPDY QAPPMEKARE HILLDELTTS LLRGHEATPH ISSGKAGDSV HSFPRPTSEN GPASHSDFDS GRFKNKRYSS SANSSGGLEP LGGLEPLAED
501: VNFKLARLYE DGPTPDQELF VETGPTQTQA NINHPSDKIT DSIQAQMKAH FDTPGAPPVE SLHNLAAGMT RTSAAQLFYQ ICVLASRDAL KVDQKVPYGE
601: IVFSRGLKM

Best Arabidopsis Sequence Match ( AT5G05490.2 )
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.