Factsheet for VIT_13s0067g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074860.1.1	Tomato	mitochondrion	15.47	55.56
Os05t0580500-01	Rice	extracellular, nucleus	5.54	47.89
KRH14918	Soybean	mitochondrion	46.25	47.49
KRH73270	Soybean	mitochondrion, nucleus	45.93	46.31
Zm00001d039132_P001	Maize	cytosol, nucleus, plastid	18.89	42.8
GSMUA_Achr5P28090_001	Banana	mitochondrion	40.72	41.32
TraesCS1D01G427800.1	Wheat	mitochondrion	39.41	39.8
TraesCS1A01G420000.1	Wheat	mitochondrion	38.93	39.31
Bra009115.1-P	Field mustard	nucleus	39.25	39.25
KXG22609	Sorghum	mitochondrion	38.6	39.11
CDX70148	Canola	nucleus	40.88	38.56
AT5G05490.1	Thale cress	cytosol	38.93	38.12
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	38.11	37.99
HORVU1Hr1G062190.10	Barley	plastid	38.27	36.66
TraesCS1B01G450400.3	Wheat	mitochondrion	38.93	34.99
Zm00001d039133_P001	Maize	nucleus	21.66	24.49
CDX98845	Canola	nucleus	37.3	19.64
CDY38417	Canola	extracellular, nucleus, plastid	9.93	19.61
CDX78861	Canola	nucleus	8.63	14.8
Bra013315.1-P	Field mustard	cytosol, nucleus, plasma membrane	9.12	13.73

Protein Annotations

EntrezGene:100262148	wikigene:100262148	MapMan:13.3.5.1.4	ProteinID:CBI25438	ProteinID:CBI25438.3	UniProt:D7T4K6
EMBL:FN595514	GO:GO:0000003	GO:GO:0000228	GO:GO:0000798	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006302	GO:GO:0006950	GO:GO:0007049
GO:GO:0007062	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010032	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0051276	GO:GO:0051455	GO:GO:0051754	EntrezGene:LOC100262148
wikigene:LOC100262148	PFAM:PF04824	PFAM:PF04825	PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	InterPro:Rad21/Rec8_C_eu
InterPro:Rad21_Rec8_N	SUPFAM:SSF46785	TIGR:TC65334	TMHMM:TMhelix	UniParc:UPI0001BE2308	ArrayExpress:VIT_13s0067g01660
EnsemblPlantsGene:VIT_13s0067g01660	EnsemblPlants:VIT_13s0067g01660.t01	InterPro:WH_DNA-bd_sf	RefSeq:XP_002273379	RefSeq:XP_002273379.2	SEG:seg

Description

No Description!

Coordinates

chr13:-:929544..935570

Molecular Weight (calculated)

68807.3 Da

IEP (calculated)

6.212

GRAVY (calculated)

-0.633

Length

614 amino acids

Sequence
(BLAST)

001: MFYSHQLLAR KAALGQIWRV AFYLLLLMAA TMHAKMNRRK LDKLNIIKIC EEILNPSVPM ALRLSGILMG GVVIIYERKL MHCLEIGYLQ VELNEAWKVK
101: AGAGSHSTDL PKRKSQAKYE AVTLPDNEEG DAPEIERFLN FSNTATTCLD NVDETYITGN TGGEDVLQDN HQADADNITL WEPFNSYQAD TNLNNRDERF
201: EEDGEIQLNF TPAEQIPSTL IPSPSHQNEH QKGDPADEIQ DLHPENQVNQ QPDEHKEVNQ SEQDQPRQGI IRKRGRRPAA FVMDDEQIII PGNLYQSWLQ
301: DPSNIVARRG KRRKNLMPIV KIANLMELPP STLIDGILTS GTGEIQYPAP LLELWMRNEA IHSVLCVGRN TPPQPPEPSS SSPSHRVHHQ GPAGFVSYSA
401: KPFISIEKQR GTNHDNNESQ FEILMTSLRT KLMNDNARTT EAVFTPGNSG GATVNEVRSF PGSASGHGSP SHTSEVNSGR INKKRPYSWS RHSGSSLEPV
501: DEEHPFNHTD PNFKLSKLSE HELLVETGPT QTQNPIIPPP IEKITDSIRM HLKTHFDTPG APQRESLDQL ASGMDRPRAA QLFYQTCVLA TRGFIKVEQN
601: EPYGDILISR GAKM

Best Arabidopsis Sequence Match ( AT5G05490.2 )
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.