CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70148	Canola	nucleus	47.08	84.33
AT5G05490.1	Thale cress	cytosol	34.91	64.91
Solyc06g074860.1.1	Tomato	mitochondrion	8.32	56.73
Os05t0580500-01	Rice	extracellular, nucleus	3.17	52.11
Zm00001d039132_P001	Maize	cytosol, nucleus, plastid	10.98	47.23
KRH14918	Soybean	mitochondrion	20.58	40.13
TraesCS1D01G427800.1	Wheat	mitochondrion	20.5	39.31
TraesCS1A01G420000.1	Wheat	mitochondrion	20.41	39.14
KXG22609	Sorghum	mitochondrion	20.33	39.11
KRH73270	Soybean	mitochondrion, nucleus	20.41	39.08
GSMUA_Achr5P28090_001	Banana	mitochondrion	20.15	38.84
VIT_13s0067g01660.t01	Wine grape	mitochondrion	19.64	37.3
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	19.64	37.18
HORVU1Hr1G062190.10	Barley	plastid	19.9	36.19
TraesCS1B01G450400.3	Wheat	mitochondrion	20.41	34.85
CDY38417	Canola	extracellular, nucleus, plastid	6.43	24.12
Zm00001d039133_P001	Maize	nucleus	11.06	23.76
CDX78861	Canola	nucleus	5.83	18.99

Protein Annotations

MapMan:13.3.5.1.4	Gene3D:3.40.50.300	GO:A0A078E9T1	EnsemblPlants:CDX98845	ProteinID:CDX98845	ProteinID:CDX98845.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0000228	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00106946001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04824
PFAM:PF04825	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	InterPro:Rad21/Rec8_C_eu	InterPro:Rad21_Rec8_N
SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI0004EDD6E2
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC09g49900D

Coordinates

chrLK031907:+:248929..258901

Molecular Weight (calculated)

130315.0 Da

IEP (calculated)

7.484

GRAVY (calculated)

-0.512

Length

1166 amino acids

Sequence
(BLAST)

0001: MDPSPNTNEA LTETRFSDLK PPLSADIIEA LLRSGPPGFE FCTPVQAATI PLLCSHKDVA VDAATGSGKT LAFVLPLVEI LRRSTSYPPK PHQVMGVIIS
0101: PTRELSTQIY NVAQPFSVLL VGGRDVRADM NTIEEEGCNV LIGTPGRLSD IMERMDILDF RNLEILILDE ADRLLEMGFQ KQVNSIISRL PKQRRTGLFS
0201: ATQTEGVEEM AKAGLRNPVR VEVRAESKSA SSNQLINSKI PSGLHLEYLV CEADKKSSQL VDLLIKNKNK KLIVYFMTCA SVDYWGLVLS KIPALKSISL
0301: IPIHGDKKQS ARDKALASFT KASSGVLLCT DYLGFTGSKF VMFMQYDPPQ DPRMFNHRVG RTARLGKEGR SIVFLLPEEE DYVEFLRRKG VSFQEKKCYQ
0401: EASDVIPFIR SLAIKDRAVL DKGVEALVSF VCAYKLQHCS YVFRWKSLKI GKLAMGYGLL RFPSVSEVKQ GRLSSEGFTP VEGGQVSGET KKAKVTSRER
0501: ETARRENSKK AVAASPATRD SNKRKLTGKQ RQTIQTADDE EEMARDYRTG GSVEQIGDLR LQSLIVTVWG PATLLARKAP LGQIWMAATL HAKINRKKLN
0601: KLDIIQICEE ILNPSVPMAL RLSGILMGGV VIVYERKVKL LFDDVTRLLV EINGAWRTKA VPDPTLLPKG RTHARKEAVT LPEKDEADFG DFEQTRSQLP
0701: KFPNFMDFQQ SYISMRLDEP NVNDIPEQED LHQAAAENIT LFEYHASYQT NTETYDRFER FDIEGDDETQ LNFNSREGAQ IPPTLIPSPP RHHDFAEGGN
0801: PTSPQPQEQQ ERGRDVFAEQ TGEQNIPDRE DQDIPRPTKK EQEGQLLQPW IMSRLLSLRK ARGPASPSFE VTKRMKMPLT QLFEEHVDGS YPPQLMELWS
0901: KCTHPLQATT SETGRPDLSG EQSPGFVQER MQDHHQTDHQ HQGTETSFQN LGSPAERLRN VLAEKDGSIE GLMAKSRASA ENNNRQAAAD ISVTPLYSGD
1001: DVRSMPSSTP SARGAASINI EINSNSRRLT RKRQHSSPRR GLEPVAEDRT WEHRAYDFEF SMLPEKGGFT ADNEVLAETG PTQTQKPVTT HTDEKITDSI
1101: KSHLKTHFET PGAPQVESLN KLAVGMKRNA AAQLFYQSCV LATRGVIKVE QTQPYGDILI ARGPNM

Best Arabidopsis Sequence Match ( AT5G05490.1 )
(BLAST)

001: MLRLESLIVT VWGPATLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR
101: TKSVPDPTLL PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET
201: YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ
301: TIIAGHVYQS WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ
401: TDHHERSDTS SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP
501: RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC
601: VLATRGVIKV NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.