CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G420000.1	Wheat	mitochondrion	71.45	71.22
TraesCS1D01G427800.1	Wheat	mitochondrion	71.29	71.05
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	66.83	65.75
HORVU1Hr1G062190.10	Barley	plastid	66.83	63.18
TraesCS1B01G450400.3	Wheat	mitochondrion	70.46	62.52
Os05t0580500-01	Rice	extracellular, nucleus	6.93	59.15
Solyc06g074860.1.1	Tomato	mitochondrion	16.67	59.06
Zm00001d039133_P001	Maize	nucleus	51.82	57.83
GSMUA_Achr5P28090_001	Banana	mitochondrion	50.99	51.07
KRH14918	Soybean	mitochondrion	41.75	42.31
KRH73270	Soybean	mitochondrion, nucleus	41.75	41.54
VIT_13s0067g01660.t01	Wine grape	mitochondrion	39.11	38.6
AT5G05490.1	Thale cress	cytosol	39.77	38.44
Bra009115.1-P	Field mustard	nucleus	38.45	37.95
CDX70148	Canola	nucleus	40.26	37.48
CDY38417	Canola	extracellular, nucleus, plastid	11.55	22.51
CDX98845	Canola	nucleus	39.11	20.33
CDX78861	Canola	nucleus	9.9	16.76
Bra013315.1-P	Field mustard	cytosol, nucleus, plasma membrane	10.4	15.44

Protein Annotations

MapMan:13.3.5.1.4	UniProt:A0A1B6PA16	GO:GO:0000003	GO:GO:0000228	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0007049	GO:GO:0007062	GO:GO:0008150	GO:GO:0009987	GO:GO:0010032	GO:GO:0016043
GO:GO:0051276	GO:GO:0051455	GO:GO:0051754	EnsemblPlants:KXG22609	ProteinID:KXG22609	ProteinID:KXG22609.1
PFAM:PF04824	PFAM:PF04825	PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	InterPro:Rad21/Rec8_C_eu	InterPro:Rad21_Rec8_N
EnsemblPlantsGene:SORBI_3009G245400	SUPFAM:SSF46785	UniParc:UPI00081AC163	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:58104366..58112009

Molecular Weight (calculated)

68257.7 Da

IEP (calculated)

5.889

GRAVY (calculated)

-0.647

Length

606 amino acids

Sequence
(BLAST)

001: MFYSHQLLAR KQPLGQIWMA ATLHSKINRK RLDKLDIIKI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLYSDVSR LLTEINEAWR IKPATDTTVL
101: PKGKAQAKYE AVTLPEKSIN MVVEQPMFFS ETDGARFRGM RLEDLDEQYF NVNLGDDDFS HADHRHQAEA VNITLVDNFE SGFAETDVFN RFERFDIADD
201: ETTVNISPDE HPKVPSTLVP SPPRQEDPPQ QEEQYAAPFL VREEPQQGGP EEQKMKQQTP KASKRKARRE LPQVIMDNNQ MMIPGNIYQT WLKDASSLVS
301: KRRKVNSNFN FIRSTKISDL MDIPPVSLIS HDNSSSELYY PKPLMQLWKD CTEVKSTKVS SGGQRSSSQE QQPRNSPPHE FPPQAGGEYE METGGLPMDF
401: TDGIEKLRAN MSAEYDRAYD TLHSDHSVTP GSPGLSRRSA SSSGGSGQAF IPLDAEVQLP SGSGRSKRGR HSSARSLGNL DTVEEDFPLE LEVMDVKMRR
501: LSDYAPTPDL LEETEPTQTP YERRSNPMDK VTEAIMSHLK LHFDSPGAPQ SESLSHLAHG MTKARAARLF YQTTVLATFD YINVTQLKPH GEELYGDILI
601: SRGSKI

Best Arabidopsis Sequence Match ( AT5G05490.2 )
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.