Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013315.1-P | Field mustard | cytosol, nucleus, plasma membrane | 96.09 | 84.31 |
| Solyc06g074860.1.1 | Tomato | mitochondrion | 14.53 | 30.41 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 3.91 | 19.72 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 12.85 | 16.97 |
| CDY38417 | Canola | extracellular, nucleus, plastid | 12.85 | 14.79 |
| CDX70148 | Canola | nucleus | 19.27 | 10.6 |
| AT5G05490.1 | Thale cress | cytosol | 17.88 | 10.21 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 17.04 | 10.03 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 17.04 | 10.03 |
| KXG22609 | Sorghum | mitochondrion | 16.76 | 9.9 |
| KRH14918 | Soybean | mitochondrion | 16.48 | 9.87 |
| KRH73270 | Soybean | mitochondrion, nucleus | 16.48 | 9.69 |
| GSMUA_Achr5P28090_001 | Banana | mitochondrion | 15.36 | 9.09 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 17.04 | 8.93 |
| HORVU1Hr1G091650.6 | Barley | cytosol, mitochondrion, nucleus | 15.36 | 8.93 |
| HORVU1Hr1G062190.10 | Barley | plastid | 15.64 | 8.74 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 14.8 | 8.63 |
| CDX98845 | Canola | nucleus | 18.99 | 5.83 |
| Zm00001d039133_P001 | Maize | nucleus | 4.47 | 2.95 |
Protein Annotations
| EnsemblPlants:CDX78861 | EnsemblPlantsGene:GSBRNA2T00131337001 | PANTHER:PTHR12585 | PANTHER:PTHR12585:SF26 | ProteinID:CDX78861 | ProteinID:CDX78861.1 |
| UniParc:UPI0004EE8E02 | MapMan:35.1 | : | : | : | : |
Description
BnaA01g09280D
Coordinates
chrLK031816:-:481823..489808
Molecular Weight (calculated)
39718.4 Da
IEP (calculated)
9.676
GRAVY (calculated)
-0.547
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYSHQKRAG KARLELICES SRKAAALHAK INGKELDKPD ITQTCEEILN SSVPVALSLD VTSLRVEETN GAWRTKAIPD PTLLPQGRTY ARKEAVTLLK
101: KADFGNFDQK WQHKEKQRAG SGEGGNTGAW SEHGSKQDIG SSSTTTSYVD SKGRYVDQLG FTWIGTPEID DESTPPAVKS TPPAVKETTI DAFVDMETLK
201: FTSTENVFLL RPQISTILDD MGDDTVKYKL VNIKSFLIQR KNNFAKSVSI VSNFSKVYPP RRLVCGPCKQ DSRNLPAGEK MPLLDLEMIR KISKGTPLEM
301: LLTSTFADKL RAQYNELTVI TPSVGCMIPV DMYRKKTASD VRPRNVQRGA RNVQRGGD
101: KADFGNFDQK WQHKEKQRAG SGEGGNTGAW SEHGSKQDIG SSSTTTSYVD SKGRYVDQLG FTWIGTPEID DESTPPAVKS TPPAVKETTI DAFVDMETLK
201: FTSTENVFLL RPQISTILDD MGDDTVKYKL VNIKSFLIQR KNNFAKSVSI VSNFSKVYPP RRLVCGPCKQ DSRNLPAGEK MPLLDLEMIR KISKGTPLEM
301: LLTSTFADKL RAQYNELTVI TPSVGCMIPV DMYRKKTASD VRPRNVQRGA RNVQRGGD
001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.