Factsheet for Zm00001d039132_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0580500-01	Rice	extracellular, nucleus	14.39	54.93
Solyc06g074860.1.1	Tomato	mitochondrion	30.26	47.95
TraesCS1D01G427800.1	Wheat	mitochondrion	65.68	29.28
TraesCS1A01G420000.1	Wheat	mitochondrion	65.68	29.28
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	61.62	27.11
TraesCS1B01G450400.3	Wheat	mitochondrion	64.94	25.77
HORVU1Hr1G062190.10	Barley	plastid	60.52	25.59
KRH14918	Soybean	mitochondrion	47.97	21.74
AT5G05490.1	Thale cress	cytosol	49.45	21.37
Bra009115.1-P	Field mustard	nucleus	47.97	21.17
KRH73270	Soybean	mitochondrion, nucleus	47.23	21.02
GSMUA_Achr5P28090_001	Banana	mitochondrion	46.49	20.83
CDX70148	Canola	nucleus	47.97	19.97
VIT_13s0067g01660.t01	Wine grape	mitochondrion	42.8	18.89
CDY38417	Canola	extracellular, nucleus, plastid	17.71	15.43
CDX78861	Canola	nucleus	16.97	12.85
Bra013315.1-P	Field mustard	cytosol, nucleus, plasma membrane	18.08	12.01
CDX98845	Canola	nucleus	47.23	10.98
Zm00001d039133_P001	Maize	nucleus	6.27	3.13

Protein Annotations

EnsemblPlants:Zm00001d039132_P001	EnsemblPlants:Zm00001d039132_T001	EnsemblPlantsGene:Zm00001d039132	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Rad21_Rec8_N	PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	PFAM:PF04825	ProteinID:AQK88801.1	SEG:seg
UniParc:UPI000843890E	UniProt:A0A1D6MDS3	MapMan:13.3.5.1.4	:	:	:

Description

Sister chromatid cohesion 1 protein 1

Coordinates

chr6:+:170742212..170753847

Molecular Weight (calculated)

30338.1 Da

IEP (calculated)

4.588

GRAVY (calculated)

-0.362

Length

271 amino acids

Sequence
(BLAST)

001: MAATLHSKIN RKRLDKLDII KICEEILNPS VPMALRLSGI LMGGVVIVYE RKVKLLYTDV SRLLTEINEA WRIKPVTDPT VLPKGKTQAK YEAVTLPEIN
101: MVVEQPMFFS EPDGAKFRRM YVQVNLDDDD FSHADDRHQA KAVNITLVDN FESGLAETDL FNHFERFDIA DDETTVNITP DEYPQVPSTL IPSPPRQEDI
201: PQQEEPYYAA PSPVHGEPQQ DGRCEADQDR LSSVVHLTRR VSNVPSATMN AMELVAGELG LGAGIEPLRS A

Best Arabidopsis Sequence Match ( AT5G05490.2 )
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.