Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G062190.10 | Barley | plastid | 96.43 | 92.67 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 87.34 | 88.49 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 86.69 | 87.83 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 85.71 | 77.31 |
| KXG22609 | Sorghum | mitochondrion | 65.75 | 66.83 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 27.11 | 61.62 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 6.82 | 59.15 |
| Solyc06g074860.1.1 | Tomato | mitochondrion | 15.58 | 56.14 |
| GSMUA_Achr5P28090_001 | Banana | mitochondrion | 47.08 | 47.93 |
| KRH14918 | Soybean | mitochondrion | 38.31 | 39.46 |
| Zm00001d039133_P001 | Maize | nucleus | 34.58 | 39.23 |
| AT5G05490.1 | Thale cress | cytosol | 39.29 | 38.6 |
| KRH73270 | Soybean | mitochondrion, nucleus | 38.15 | 38.59 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 37.99 | 38.11 |
| Bra009115.1-P | Field mustard | nucleus | 35.88 | 35.99 |
| CDX70148 | Canola | nucleus | 37.82 | 35.79 |
| CDY38417 | Canola | extracellular, nucleus, plastid | 11.36 | 22.51 |
| CDX98845 | Canola | nucleus | 37.18 | 19.64 |
| CDX78861 | Canola | nucleus | 8.93 | 15.36 |
| Bra013315.1-P | Field mustard | cytosol, nucleus, plasma membrane | 9.42 | 14.22 |
Protein Annotations
| Gene3D:1.10.10.580 | MapMan:13.3.5.1.3 | MapMan:13.3.5.1.4 | UniProt:A0A287GQN1 | GO:GO:0000228 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU1Hr1G091650 | EnsemblPlants:HORVU1Hr1G091650.6 | InterPro:IPR023093 | PFAM:PF04824 | PFAM:PF04825 | PANTHER:PTHR12585 |
| PANTHER:PTHR12585:SF26 | InterPro:Rad21/Rec8_C_eu | InterPro:Rad21_Rec8_N | SUPFAM:SSF46785 | InterPro:ScpA-like_C | UniParc:UPI000B473EFD |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:548883588..548890511
Molecular Weight (calculated)
68650.3 Da
IEP (calculated)
5.965
GRAVY (calculated)
-0.655
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: DLTAAAAAAA ADGMFYSHQL LARKAPLGQI WIAATFKSKI NRRRLDKLDI IKICEEILNP SVPMALRLSG ILMGGVVIVY KKKVKLLYDD VSRLLIELNE
101: AWKIRPVVDH TLLPKGKAQA KYEAVTLPEN MMDMELERPV LFTNTDTARF RGMRLEDLDE QYVNVNLDDD DISRADRHHQ AEAVNITLVD NFESGFAETD
201: IFTRFERFDI ADDDTIFNIT PDGHPEAPST LVPSPPRPED PFQQQQQRAA PSPIREEPQQ GDSLKEQEEQ KTKEKQPTKR AKRKARGKGP QVIMDNQIMI
301: PGNIYQSWLK DPSSLTSKRR QVRSKINPIQ AIKMGELMDL PPSTLMCCSD DSQEIYYPQQ LRQLWKECTK VNPPKPSSSS GVKSSSSSQE TQPRNSSPQP
401: QGDQNEMGAQ PMDFTDLIEE MRANKSGGFE GVFDGPLGAH SVTPGSPGLS RRSASSSGGS GRGGFLPLGP EIPLQFGDGR AKRKQLSSGR SLGNLDPIEE
501: EFPMEQEGRD FKLRRVSEFG PTPDLMEETE PTQTPFSKQS SPPDHITESI HSYLKLHFES ADAPLSESLS HLTHGMNTAQ AARLFYQTCV LATRDHIKVT
601: QDEAYGPIHI SKGANM
101: AWKIRPVVDH TLLPKGKAQA KYEAVTLPEN MMDMELERPV LFTNTDTARF RGMRLEDLDE QYVNVNLDDD DISRADRHHQ AEAVNITLVD NFESGFAETD
201: IFTRFERFDI ADDDTIFNIT PDGHPEAPST LVPSPPRPED PFQQQQQRAA PSPIREEPQQ GDSLKEQEEQ KTKEKQPTKR AKRKARGKGP QVIMDNQIMI
301: PGNIYQSWLK DPSSLTSKRR QVRSKINPIQ AIKMGELMDL PPSTLMCCSD DSQEIYYPQQ LRQLWKECTK VNPPKPSSSS GVKSSSSSQE TQPRNSSPQP
401: QGDQNEMGAQ PMDFTDLIEE MRANKSGGFE GVFDGPLGAH SVTPGSPGLS RRSASSSGGS GRGGFLPLGP EIPLQFGDGR AKRKQLSSGR SLGNLDPIEE
501: EFPMEQEGRD FKLRRVSEFG PTPDLMEETE PTQTPFSKQS SPPDHITESI HSYLKLHFES ADAPLSESLS HLTHGMNTAQ AARLFYQTCV LATRDHIKVT
601: QDEAYGPIHI SKGANM
001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.