Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22609 | Sorghum | mitochondrion | 57.83 | 51.82 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 41.99 | 37.5 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 41.99 | 37.5 |
| HORVU1Hr1G091650.6 | Barley | cytosol, mitochondrion, nucleus | 39.23 | 34.58 |
| HORVU1Hr1G062190.10 | Barley | plastid | 39.59 | 33.54 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 41.8 | 33.24 |
| GSMUA_Achr5P28090_001 | Banana | mitochondrion | 36.65 | 32.89 |
| KRH14918 | Soybean | mitochondrion | 24.31 | 22.07 |
| KRH73270 | Soybean | mitochondrion, nucleus | 24.68 | 22.0 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 24.49 | 21.66 |
| Bra009115.1-P | Field mustard | nucleus | 23.76 | 21.01 |
| AT5G05490.1 | Thale cress | cytosol | 23.02 | 19.94 |
| CDX70148 | Canola | nucleus | 23.76 | 19.82 |
| CDX98845 | Canola | nucleus | 23.76 | 11.06 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 1.1 | 8.45 |
| Solyc06g074860.1.1 | Tomato | mitochondrion | 2.58 | 8.19 |
| CDY38417 | Canola | extracellular, nucleus, plastid | 4.6 | 8.04 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 3.13 | 6.27 |
| CDX78861 | Canola | nucleus | 2.95 | 4.47 |
| Bra013315.1-P | Field mustard | cytosol, nucleus, plasma membrane | 3.31 | 4.41 |
Protein Annotations
| EnsemblPlants:Zm00001d039133_P001 | EnsemblPlants:Zm00001d039133_T001 | EnsemblPlantsGene:Zm00001d039133 | GO:GO:0000228 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:Rad21/Rec8_C_eu | InterPro:WH_DNA-bd_sf | PANTHER:PTHR12585 | PANTHER:PTHR12585:SF26 |
| PFAM:PF04824 | ProteinID:AQK88803.1 | SEG:seg | SUPFAM:SSF46785 | UniParc:UPI000842CB93 | UniProt:A0A1D6MDS4 |
| MapMan:13.3.5.1.4 | : | : | : | : | : |
Description
absence of first division1 absence of first division1
Coordinates
chr6:+:170759206..170773388
Molecular Weight (calculated)
59572.9 Da
IEP (calculated)
9.819
GRAVY (calculated)
-0.929
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MGARTPRRGA NAGEGAARRG GSAQEGGREH QQGTSMPREW ALACWWRQEE KPGGWKERGG LRQRQGRGEV DGGRRREGQQ TDGGGSECRR LGGAAPGRVA
101: GRGRAAGGAE PGRVWAAPAT DGGEGEAPKR REAGKARERE EARPATESSS REAAKRSRSA AEGRPPVEDL TTPSRHLAAI TESSLAGGPE DQEEQKMKQQ
201: PPKASKRKAR WEVPRVIMDN NQMMIPGNIY QTWLKDASSL VSKRRKLNSN FNFIRSTKIS DLMHIPPVAL ISHDNLFSEL CYPKPLMQLW KDCTEVKSTK
301: ASSGGQRSSS QEPQPKNSPP QAGGEYEMET GGLPMDLTDG IEKLRANMSA KYDRAYNILH SDHSVTPGSP GLSRRSASSS GGSGSAFIQL DPEVQLPSGS
401: GRSKRGQHSS ARSLGNLDTV EEDFPLEQEV RDFKMRRLSD YVPTPDLLEE TEPTQTPYER RSNPMDKITE TIQSHLKLHF DTPGVPQSES LSHLAHGMTK
501: ARAARLFYQI AVLATCDYIK VTQLERKGDE LYGDILISRG LKM
101: GRGRAAGGAE PGRVWAAPAT DGGEGEAPKR REAGKARERE EARPATESSS REAAKRSRSA AEGRPPVEDL TTPSRHLAAI TESSLAGGPE DQEEQKMKQQ
201: PPKASKRKAR WEVPRVIMDN NQMMIPGNIY QTWLKDASSL VSKRRKLNSN FNFIRSTKIS DLMHIPPVAL ISHDNLFSEL CYPKPLMQLW KDCTEVKSTK
301: ASSGGQRSSS QEPQPKNSPP QAGGEYEMET GGLPMDLTDG IEKLRANMSA KYDRAYNILH SDHSVTPGSP GLSRRSASSS GGSGSAFIQL DPEVQLPSGS
401: GRSKRGQHSS ARSLGNLDTV EEDFPLEQEV RDFKMRRLSD YVPTPDLLEE TEPTQTPYER RSNPMDKITE TIQSHLKLHF DTPGVPQSES LSHLAHGMTK
501: ARAARLFYQI AVLATCDYIK VTQLERKGDE LYGDILISRG LKM
001: MLRLESLIVT VWGPATLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR
101: TKSVPDPTLL PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET
201: YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ
301: TIIAGHVYQS WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ
401: TDHHERSDTS SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP
501: RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC
601: VLATRGVIKV NQAEPYGDIL IARGPNM
101: TKSVPDPTLL PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET
201: YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ
301: TIIAGHVYQS WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ
401: TDHHERSDTS SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP
501: RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC
601: VLATRGVIKV NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.