Factsheet for AT5G05490.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70148	Canola	nucleus	68.58	66.05
Bra009115.1-P	Field mustard	nucleus	64.11	65.47
Solyc06g074860.1.1	Tomato	mitochondrion	14.99	54.97
Os05t0580500-01	Rice	extracellular, nucleus	6.22	54.93
Zm00001d039132_P001	Maize	cytosol, nucleus, plastid	21.37	49.45
TraesCS1D01G427800.1	Wheat	mitochondrion	40.51	41.78
TraesCS1A01G420000.1	Wheat	mitochondrion	40.35	41.61
KRH14918	Soybean	mitochondrion	39.23	41.14
KRH73270	Soybean	mitochondrion, nucleus	39.08	40.23
GSMUA_Achr5P28090_001	Banana	mitochondrion	38.44	39.83
KXG22609	Sorghum	mitochondrion	38.44	39.77
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	38.6	39.29
VIT_13s0067g01660.t01	Wine grape	mitochondrion	38.12	38.93
HORVU1Hr1G062190.10	Barley	plastid	38.92	38.07
TraesCS1B01G450400.3	Wheat	mitochondrion	40.35	37.04
CDX98845	Canola	nucleus	64.91	34.91
CDY38417	Canola	extracellular, nucleus, plastid	12.12	24.44
Zm00001d039133_P001	Maize	nucleus	19.94	23.02
CDX78861	Canola	nucleus	10.21	17.88
Bra013315.1-P	Field mustard	cytosol, nucleus, plasma membrane	10.85	16.67

Protein Annotations

Gene3D:1.10.10.580	MapMan:13.3.5.1.4	EntrezGene:830432	ProteinID:AED90879.1	ProteinID:AED90880.1	EMBL:AF080619
EMBL:AF080620	EMBL:AJ238306	ArrayExpress:AT5G05490	EnsemblPlantsGene:AT5G05490	RefSeq:AT5G05490	TAIR:AT5G05490
RefSeq:AT5G05490-TAIR-G	EnsemblPlants:AT5G05490.1	TAIR:AT5G05490.1	Unigene:At.690	ProteinID:BAB11538.1	GO:GO:0000003
GO:GO:0000228	GO:GO:0000798	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0006302	GO:GO:0006950	GO:GO:0007049	GO:GO:0007059	GO:GO:0007062
GO:GO:0008150	GO:GO:0008152	GO:GO:0008278	GO:GO:0009987	GO:GO:0010032	GO:GO:0016043
GO:GO:0051276	GO:GO:0051321	GO:GO:0051455	GO:GO:0051754	InterPro:IPR023093	RefSeq:NP_196168.1
RefSeq:NP_850773.1	PFAM:PF04824	PFAM:PF04825	PO:PO:0000003	PO:PO:0000293	PO:PO:0004507
PO:PO:0007616	PO:PO:0009005	PO:PO:0009009	PO:PO:0009025	PO:PO:0009046	PO:PO:0025022
PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	UniProt:Q9S7T7	InterPro:Rad21/Rec8_C_eu	InterPro:Rad21_Rec8_N	SUPFAM:SSF46785
Symbol:SYN1	InterPro:ScpA-like_C	UniParc:UPI00000A1BF3	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]

Coordinates

chr5:+:1624206..1629234

Molecular Weight (calculated)

71231.8 Da

IEP (calculated)

6.160

GRAVY (calculated)

-0.799

Length

627 amino acids

Sequence
(BLAST)

001: MLRLESLIVT VWGPATLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR
101: TKSVPDPTLL PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET
201: YDRFERFDIE GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ
301: TIIAGHVYQS WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ
401: TDHHERSDTS SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP
501: RRGLEPVAEE RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC
601: VLATRGVIKV NQAEPYGDIL IARGPNM

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.