Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G091650.6 | Barley | cytosol, mitochondrion, nucleus | 92.67 | 96.43 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 84.4 | 88.98 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 83.78 | 88.32 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 82.84 | 77.75 |
| KXG22609 | Sorghum | mitochondrion | 63.18 | 66.83 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 25.59 | 60.52 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 6.55 | 59.15 |
| Solyc06g074860.1.1 | Tomato | mitochondrion | 14.82 | 55.56 |
| GSMUA_Achr5P28090_001 | Banana | mitochondrion | 45.55 | 48.26 |
| KRH14918 | Soybean | mitochondrion | 37.13 | 39.8 |
| Zm00001d039133_P001 | Maize | nucleus | 33.54 | 39.59 |
| KRH73270 | Soybean | mitochondrion, nucleus | 36.97 | 38.92 |
| AT5G05490.1 | Thale cress | cytosol | 38.07 | 38.92 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 36.66 | 38.27 |
| Bra009115.1-P | Field mustard | nucleus | 35.1 | 36.65 |
| CDX70148 | Canola | nucleus | 37.13 | 36.56 |
| CDY38417 | Canola | extracellular, nucleus, plastid | 11.23 | 23.15 |
| CDX98845 | Canola | nucleus | 36.19 | 19.9 |
| CDX78861 | Canola | nucleus | 8.74 | 15.64 |
| Bra013315.1-P | Field mustard | cytosol, nucleus, plasma membrane | 9.2 | 14.46 |
Protein Annotations
| Gene3D:1.10.10.580 | MapMan:13.3.5.1.3 | MapMan:13.3.5.1.4 | UniProt:A0A287FWE3 | GO:GO:0000228 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU1Hr1G062190 | EnsemblPlants:HORVU1Hr1G062190.10 | InterPro:IPR023093 | PFAM:PF04824 | PFAM:PF04825 | PANTHER:PTHR12585 |
| PANTHER:PTHR12585:SF26 | InterPro:Rad21/Rec8_C_eu | InterPro:Rad21_Rec8_N | SUPFAM:SSF46785 | InterPro:ScpA-like_C | UniParc:UPI000B46FA14 |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:448498923..448505993
Molecular Weight (calculated)
71442.6 Da
IEP (calculated)
6.464
GRAVY (calculated)
-0.704
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: NPSQNPHPLR PSPLSRARPP QRGVAFPSSD LPAASVDGMF YSHQLLARKA PLGQIWIAAT FKAKINRRRL DKLDIIKICE EILNPSVPMA LRLSGILMGG
101: VVIVYKKKVK LLYDDVSRLL IELNQAWKIR PAVDHTLLPK GKAQAKYEAV TLPENMMDME LERPVLFTNT DTARFRGMRL EDLDEQYVNV NLDDDDISRA
201: DRHHQAEAVN ITLVDNFESG FAETDIFNRF ERFDIADDDT IFNITPDGHP EAPSTLVPSP PRPEDPFQQQ QQRAAPSPIR EEPQQGDSLK EQEEQKTKEE
301: QPTKRAKRKA CGKGPQVIMD NQIMIPGNIY QSWLKDPSSL TSKRRQVRSK INPIQAIKMG ELMDLPPSAL MCCSDDSQEI YYPQQLRQLW KECTKVNPPK
401: PSSSSGVKSS SSSQETQPRN SSPQPQGDQN EMGARPMDFT DLIEEMRANK SGGFEGVFDG PRGDCSVTPG SPGLSRRSAS SSGGSGRGGF LPLGPEIPLQ
501: SGNGRAKRKQ LSSGRSLGNL DPIEEEFPME QEGRDFKLRR VSEFGPTPDL MEETEPTQTP FSKQSSPPDH ITESIHSYLK LHFESADAPL SESLSHLTHG
601: MNTAQAARLF YQTCVLATRD HIKVTQDEAY GPIHISKGAN M
101: VVIVYKKKVK LLYDDVSRLL IELNQAWKIR PAVDHTLLPK GKAQAKYEAV TLPENMMDME LERPVLFTNT DTARFRGMRL EDLDEQYVNV NLDDDDISRA
201: DRHHQAEAVN ITLVDNFESG FAETDIFNRF ERFDIADDDT IFNITPDGHP EAPSTLVPSP PRPEDPFQQQ QQRAAPSPIR EEPQQGDSLK EQEEQKTKEE
301: QPTKRAKRKA CGKGPQVIMD NQIMIPGNIY QSWLKDPSSL TSKRRQVRSK INPIQAIKMG ELMDLPPSAL MCCSDDSQEI YYPQQLRQLW KECTKVNPPK
401: PSSSSGVKSS SSSQETQPRN SSPQPQGDQN EMGARPMDFT DLIEEMRANK SGGFEGVFDG PRGDCSVTPG SPGLSRRSAS SSGGSGRGGF LPLGPEIPLQ
501: SGNGRAKRKQ LSSGRSLGNL DPIEEEFPME QEGRDFKLRR VSEFGPTPDL MEETEPTQTP FSKQSSPPDH ITESIHSYLK LHFESADAPL SESLSHLTHG
601: MNTAQAARLF YQTCVLATRD HIKVTQDEAY GPIHISKGAN M
001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.