Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plasma membrane 1
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78861 | Canola | nucleus | 84.31 | 96.09 |
| Solyc06g074860.1.1 | Tomato | mitochondrion | 13.48 | 32.16 |
| Os05t0580500-01 | Rice | extracellular, nucleus | 4.17 | 23.94 |
| Zm00001d039132_P001 | Maize | cytosol, nucleus, plastid | 12.01 | 18.08 |
| Bra009115.1-P | Field mustard | nucleus | 16.67 | 11.07 |
| AT5G05490.1 | Thale cress | cytosol | 16.67 | 10.85 |
| TraesCS1D01G427800.1 | Wheat | mitochondrion | 15.69 | 10.53 |
| TraesCS1A01G420000.1 | Wheat | mitochondrion | 15.69 | 10.53 |
| KXG22609 | Sorghum | mitochondrion | 15.44 | 10.4 |
| KRH14918 | Soybean | mitochondrion | 15.2 | 10.37 |
| KRH73270 | Soybean | mitochondrion, nucleus | 15.2 | 10.18 |
| GSMUA_Achr5P28090_001 | Banana | mitochondrion | 14.22 | 9.59 |
| HORVU1Hr1G091650.6 | Barley | cytosol, mitochondrion, nucleus | 14.22 | 9.42 |
| TraesCS1B01G450400.3 | Wheat | mitochondrion | 15.69 | 9.37 |
| HORVU1Hr1G062190.10 | Barley | plastid | 14.46 | 9.2 |
| VIT_13s0067g01660.t01 | Wine grape | mitochondrion | 13.73 | 9.12 |
| Zm00001d039133_P001 | Maize | nucleus | 4.41 | 3.31 |
Protein Annotations
Description
AT5G05490 (E=9e-012) SYN1, ATREC8, REC8 | SYN1 (SYNAPTIC 1)
Coordinates
chrA01:-:4930298..4933692
Molecular Weight (calculated)
45636.6 Da
IEP (calculated)
9.732
GRAVY (calculated)
-0.456
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYSHQKRAE KARLELICES SRKAAALHAK INGKELDKPD ITQTCEEILN SSVPVALSLV DERKVVKQHL LGNFRIQIIF SIQLVFSSNR VFFDWFSEDV
101: TSLRVEETNG AWRTKAIPDP TLLPQGRTYA RKEAVTLLKK ADFGNFDQKW QHKEKQRAGS GEGGNTGAWS EHGSKQDIGS SSTTTSSVDS KGRYVDQLGF
201: TWIGTPKIDD ESTPPGVKST PPGVKETAID AFVDMETLKF TSTENVFLLR PQISTILDDM GDDTVKYKLV NIKSFLIQRK NNFAKSVSIV SNFSKVYPPR
301: RLVCGPCKQD SRNLPAGEKM PLLDLEMIRK ISVYAMTPGR KAVMIISNDL YLTSTFADKL RAQYNELTVI TPSVGCMIPV DMYREKTASD VRPRNVQRGA
401: RNVQRGGD
101: TSLRVEETNG AWRTKAIPDP TLLPQGRTYA RKEAVTLLKK ADFGNFDQKW QHKEKQRAGS GEGGNTGAWS EHGSKQDIGS SSTTTSSVDS KGRYVDQLGF
201: TWIGTPKIDD ESTPPGVKST PPGVKETAID AFVDMETLKF TSTENVFLLR PQISTILDDM GDDTVKYKLV NIKSFLIQRK NNFAKSVSIV SNFSKVYPPR
301: RLVCGPCKQD SRNLPAGEKM PLLDLEMIRK ISVYAMTPGR KAVMIISNDL YLTSTFADKL RAQYNELTVI TPSVGCMIPV DMYREKTASD VRPRNVQRGA
401: RNVQRGGD
001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM
Arabidopsis Description
SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.