Factsheet for Os05t0580500-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

nucleus: 21606318

gfp PMID: 21606318 doi

T Shao, D Tang, K Wang, M Wang, L Che, B Qin, H Yu, M Li, M Gu, Z Cheng

State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074860.1.1	Tomato	mitochondrion	53.52	22.22
Zm00001d039132_P001	Maize	cytosol, nucleus, plastid	54.93	14.39
TraesCS1D01G427800.1	Wheat	mitochondrion	61.97	7.24
TraesCS1A01G420000.1	Wheat	mitochondrion	61.97	7.24
KRH14918	Soybean	mitochondrion	59.15	7.02
KXG22609	Sorghum	mitochondrion	59.15	6.93
KRH73270	Soybean	mitochondrion, nucleus	59.15	6.9
HORVU1Hr1G091650.6	Barley	cytosol, mitochondrion, nucleus	59.15	6.82
HORVU1Hr1G062190.10	Barley	plastid	59.15	6.55
TraesCS1B01G450400.3	Wheat	mitochondrion	61.97	6.44
AT5G05490.1	Thale cress	cytosol	54.93	6.22
Bra009115.1-P	Field mustard	nucleus	50.7	5.86
CDX70148	Canola	nucleus	53.52	5.84
VIT_13s0067g01660.t01	Wine grape	mitochondrion	47.89	5.54
CDY38417	Canola	extracellular, nucleus, plastid	23.94	5.47
GSMUA_Achr5P28090_001	Banana	mitochondrion	45.07	5.29
Bra013315.1-P	Field mustard	cytosol, nucleus, plasma membrane	23.94	4.17
CDX78861	Canola	nucleus	19.72	3.91
CDX98845	Canola	nucleus	52.11	3.17
Zm00001d039133_P001	Maize	nucleus	8.45	1.1

Protein Annotations

MapMan:35.1	UniProt:A0A0P0WRH8	ProteinID:BAS95517.1	GO:GO:0000228	GO:GO:0000798	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006302	GO:GO:0006950	GO:GO:0007049
GO:GO:0007062	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:Os05g0580500
EnsemblPlants:Os05t0580500-01	PFAM:PF04825	PANTHER:PTHR12585	PANTHER:PTHR12585:SF26	InterPro:Rad21_Rec8_N	UniParc:UPI000393AE44

Description

RAD21-4 PROTEINSimilar to 10A19I.14. (Os05t0580500-01)

Coordinates

chr5:+:28889542..28896992

Molecular Weight (calculated)

8024.0 Da

IEP (calculated)

7.254

GRAVY (calculated)

0.651

Length

71 amino acids

Sequence
(BLAST)

1: RFFLGGFCAC GFWVSEEILN PSVPMALRLS GILMGGVAIV YERKVKALYD DVSRFLVKFE FDFHLILVPP P

Best Arabidopsis Sequence Match ( AT5G05490.2 )
(BLAST)

001: MFYSHQLLAR KAPLGQIWMA ATLHAKINRK KLDKLDIIQI CEEILNPSVP MALRLSGILM GGVVIVYERK VKLLFDDVNR FLVEINGAWR TKSVPDPTLL
101: PKGKTHARKE AVTLPENEEA DFGDFEQTRN VPKFGNYMDF QQTFISMRLD ESHVNNNPEP EDLGQQFHQA DAENITLFEY HGSFQTNNET YDRFERFDIE
201: GDDETQMNSN PREGAEIPTT LIPSPPRHHD IPEGVNPTSP QRQEQQENRR DGFAEQMEEQ NIPDKEEHDR PQPAKKRARK TATSAMDYEQ TIIAGHVYQS
301: WLQDTSDILC RGEKRKVRGT IRPDMESFKR ANMPPTQLFE KDSSYPPQLY QLWSKNTQVL QTSSSESRHP DLRAEQSPGF VQERMHNHHQ TDHHERSDTS
401: SQNLDSPAEI LRTVRTGKGA SVESMMAGSR ASPETINRQA ADINVTPFYS GDDVRSMPST PSARGAASIN NIEISSKSRM PNRKRPNSSP RRGLEPVAEE
501: RPWEHREYEF EFSMLPEKRF TADKEILFET ASTQTQKPVC NQSDEMITDS IKSHLKTHFE TPGAPQVESL NKLAVGMDRN AAAKLFFQSC VLATRGVIKV
601: NQAEPYGDIL IARGPNM

Arabidopsis Description

SYN1Sister chromatid cohesion 1 protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.