Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
20363867
plastid: 22908117 nucleus: 25464976 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032056 | Potato | nucleus | 93.06 | 93.27 |
| Solyc12g056060.1.1 | Tomato | extracellular | 17.6 | 30.97 |
| Solyc08g008260.2.1 | Tomato | nucleus | 16.55 | 24.61 |
Protein Annotations
| EnsemblPlants:Solyc08g082010.2.1 | EnsemblPlantsGene:Solyc08g082010.2 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011684 | InterPro:NAB | ncoils:Coil | PANTHER:PTHR13140 | PANTHER:PTHR13140:SF664 | PFAM:PF07765 |
| PFscan:PS51774 | SEG:seg | UniParc:UPI000276C4B3 | UniProt:K4CPJ7 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr8:+:64929443..64933923
Molecular Weight (calculated)
153470.0 Da
IEP (calculated)
4.517
GRAVY (calculated)
-0.887
Length
1341 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTKHRFRERV KSFFGSHVDP EKDEELKGTK AEIEDKIQKI LAYLKGEDAG DEKEPLVEAV EDFHNHYQSL YARYDHLTGK LRDNVHGKHE KDSSSSSSDS
0101: DSDSDGSTRK KGKKNGKLKF TEVTDGIKEE LASANLEIIE LKAQLMAAKE EKDALQSEHQ STLSKLQEAE TTICSLTSEA ERLEVENSKH LGETVDLKEN
0201: LEKSAKLESE LMQKLDEMTK ERESLLLEKE AMGNSILEGN NTIEELRTTM GQLKEEKETL HIELEALKSE LPSVKEQLDS AEKEIAQLSQ TQKVTEEDNS
0301: SLSSKVLQLS EEIEQAQQKI QDLVTEADQL KGMLDEKEKE FASHKEIHDA HKTEASTRLR GMELEIGSLQ SQRSEIEKQK EDELSALLNK LEEKEGEFSS
0401: QMEALTTKIS NMQLEIESLS ELKGKLEEEM EQQRNKMSAE VEDLTNKVNK KDLELESLCS QKLELEAELE KKTQEISGFS SEIESLKEDI ANKSAESLKI
0501: LEEKESSLSK VKDLEVELKS LQNLKHELEE QLTSKDETIV QMKNDKEMMH DKISEIERAL TERESELAIL RKNSEDGEIE SSAQIAALTL QLSNLKEHSE
0601: NLQVEKSQIE SQLEAKAGEA SEYLTQLEKL KGELARNTSE GQRMLEEKEG LVVQVREEKG SLLRKISELE SALAEKVEEH ETLQKKLEEV QNEASTQIAA
0701: LTEEVDKLRQ QTELLQTEKS QMELVIETGK QEFTESLAQA ENQNTELSQK LVDQEIRLKE REEAFGKLVE EKDSLVIQVN DLQAEVKSLC EKISTLEENT
0801: SNTNNEISLL KDEKESFLLK ISELENSLVK KVEEYQALQK RLEDVQNDTS AQIVALTEEA NKSQQQIELL QTEKDQLTLV IEGGKQESTE SLAQAESQNT
0901: ELSQKIVDQE LKLKEQEEAL GKLVEEKEGL VVQVNDLQAE AKSLCEQMST LEENISSANN ESNLLKEEKV SLLSKLSDLE NALTEKVDEH GQTLAHAENQ
1001: HTELSQKIVD REMKIKEHEE AFGKLGEEHK QLDGMLQEYK EKIKLAEMKI EEMTEEYQKN LESKDHKIHE LDNKIEDLKR DLEMKGDEIS TLVENVRNTE
1101: VKLRLTIQKL RVTEQLLTEK EVDHQKKEEK LLQHQKLLEE RIATLSGVIT EYKETQAKIK ADLSNKVNDT LTQMDTFNMK FEEDTGHLES RIYEILNELK
1201: VALNLIKVTS EEKKQLKKEV NTLVQQLNDE KECALVLKEK VEKLEFAGKN EVSQRGSLTE TVHQLEVKIA TLHKMLVEKD EKMGEYERKM NDKDKGMLDL
1301: SEEKREAIRQ LCIWIDYHQS RYDDLIERIS TKTKGKRQVT A
0101: DSDSDGSTRK KGKKNGKLKF TEVTDGIKEE LASANLEIIE LKAQLMAAKE EKDALQSEHQ STLSKLQEAE TTICSLTSEA ERLEVENSKH LGETVDLKEN
0201: LEKSAKLESE LMQKLDEMTK ERESLLLEKE AMGNSILEGN NTIEELRTTM GQLKEEKETL HIELEALKSE LPSVKEQLDS AEKEIAQLSQ TQKVTEEDNS
0301: SLSSKVLQLS EEIEQAQQKI QDLVTEADQL KGMLDEKEKE FASHKEIHDA HKTEASTRLR GMELEIGSLQ SQRSEIEKQK EDELSALLNK LEEKEGEFSS
0401: QMEALTTKIS NMQLEIESLS ELKGKLEEEM EQQRNKMSAE VEDLTNKVNK KDLELESLCS QKLELEAELE KKTQEISGFS SEIESLKEDI ANKSAESLKI
0501: LEEKESSLSK VKDLEVELKS LQNLKHELEE QLTSKDETIV QMKNDKEMMH DKISEIERAL TERESELAIL RKNSEDGEIE SSAQIAALTL QLSNLKEHSE
0601: NLQVEKSQIE SQLEAKAGEA SEYLTQLEKL KGELARNTSE GQRMLEEKEG LVVQVREEKG SLLRKISELE SALAEKVEEH ETLQKKLEEV QNEASTQIAA
0701: LTEEVDKLRQ QTELLQTEKS QMELVIETGK QEFTESLAQA ENQNTELSQK LVDQEIRLKE REEAFGKLVE EKDSLVIQVN DLQAEVKSLC EKISTLEENT
0801: SNTNNEISLL KDEKESFLLK ISELENSLVK KVEEYQALQK RLEDVQNDTS AQIVALTEEA NKSQQQIELL QTEKDQLTLV IEGGKQESTE SLAQAESQNT
0901: ELSQKIVDQE LKLKEQEEAL GKLVEEKEGL VVQVNDLQAE AKSLCEQMST LEENISSANN ESNLLKEEKV SLLSKLSDLE NALTEKVDEH GQTLAHAENQ
1001: HTELSQKIVD REMKIKEHEE AFGKLGEEHK QLDGMLQEYK EKIKLAEMKI EEMTEEYQKN LESKDHKIHE LDNKIEDLKR DLEMKGDEIS TLVENVRNTE
1101: VKLRLTIQKL RVTEQLLTEK EVDHQKKEEK LLQHQKLLEE RIATLSGVIT EYKETQAKIK ADLSNKVNDT LTQMDTFNMK FEEDTGHLES RIYEILNELK
1201: VALNLIKVTS EEKKQLKKEV NTLVQQLNDE KECALVLKEK VEKLEFAGKN EVSQRGSLTE TVHQLEVKIA TLHKMLVEKD EKMGEYERKM NDKDKGMLDL
1301: SEEKREAIRQ LCIWIDYHQS RYDDLIERIS TKTKGKRQVT A
0001: MKKHKFRETL KSFFEPHFDH EKGEMLKGTK TEIDEKVNKI LGMVESGDVN EDESNRQVVA DLVKEFYSEY QSLYRQYDDL TGEIRKKVNG KGESSSSSSS
0101: DSDSDHSSKR KVKRNGNGKV EKDVELVTGA LKQQIEAANL EIADLKGKLT TTVEEKEAVD SELELALMKL KESEEISSKL KLETEKLEDE KSIALSDNRE
0201: LHQKLEVAGK TETDLNQKLE DIKKERDELQ TERDNGIKRF QEAEKVAEDW KTTSDQLKDE TSNLKQQLEA SEQRVSELTS GMNSAEEENK SLSLKVSEIS
0301: DVIQQGQTTI QELISELGEM KEKYKEKESE HSSLVELHKT HERESSSQVK ELEAHIESSE KLVADFTQSL NNAEEEKKLL SQKIAELSNE IQEAQNTMQE
0401: LMSESGQLKE SHSVKERELF SLRDIHEIHQ RDSSTRASEL EAQLESSKQQ VSDLSASLKA AEEENKAISS KNVETMNKLE QTQNTIQELM AELGKLKDSH
0501: REKESELSSL VEVHETHQRD SSIHVKELEE QVESSKKLVA ELNQTLNNAE EEKKVLSQKI AELSNEIKEA QNTIQELVSE SGQLKESHSV KDRDLFSLRD
0601: IHETHQRESS TRVSELEAQL ESSEQRISDL TVDLKDAEEE NKAISSKNLE IMDKLEQAQN TIKELMDELG ELKDRHKEKE SELSSLVKSA DQQVADMKQS
0701: LDNAEEEKKM LSQRILDISN EIQEAQKTIQ EHMSESEQLK ESHGVKEREL TGLRDIHETH QRESSTRLSE LETQLKLLEQ RVVDLSASLN AAEEEKKSLS
0801: SMILEITDEL KQAQSKVQEL VTELAESKDT LTQKENELSS FVEVHEAHKR DSSSQVKELE ARVESAEEQV KELNQNLNSS EEEKKILSQQ ISEMSIKIKR
0901: AESTIQELSS ESERLKGSHA EKDNELFSLR DIHETHQREL STQLRGLEAQ LESSEHRVLE LSESLKAAEE ESRTMSTKIS ETSDELERTQ IMVQELTADS
1001: SKLKEQLAEK ESKLFLLTEK DSKSQVQIKE LEATVATLEL ELESVRARII DLETEIASKT TVVEQLEAQN REMVARISEL EKTMEERGTE LSALTQKLED
1101: NDKQSSSSIE TLTAEIDGLR AELDSMSVQK EEVEKQMVCK SEEASVKIKR LDDEVNGLRQ QVASLDSQRA ELEIQLEKKS EEISEYLSQI TNLKEEIINK
1201: VKVHESILEE INGLSEKIKG RELELETLGK QRSELDEELR TKKEENVQMH DKINVASSEI MALTELINNL KNELDSLQVQ KSETEAELER EKQEKSELSN
1301: QITDVQKALV EQEAAYNTLE EEHKQINELF KETEATLNKV TVDYKEAQRL LEERGKEVTS RDSTIGVHEE TMESLRNELE MKGDEIETLM EKISNIEVKL
1401: RLSNQKLRVT EQVLTEKEEA FRKEEAKHLE EQALLEKNLT MTHETYRGMI KEIADKVNIT VDGFQSMSEK LTEKQGRYEK TVMEASKILW TATNWVIERN
1501: HEKEKMNKEI EKKDEEIKKL GGKVREDEKE KEMMKETLMG LGEEKREAIR QLCVWIDHHR SRCEYLEEVL SKTVVARGQR RVSQRT
0101: DSDSDHSSKR KVKRNGNGKV EKDVELVTGA LKQQIEAANL EIADLKGKLT TTVEEKEAVD SELELALMKL KESEEISSKL KLETEKLEDE KSIALSDNRE
0201: LHQKLEVAGK TETDLNQKLE DIKKERDELQ TERDNGIKRF QEAEKVAEDW KTTSDQLKDE TSNLKQQLEA SEQRVSELTS GMNSAEEENK SLSLKVSEIS
0301: DVIQQGQTTI QELISELGEM KEKYKEKESE HSSLVELHKT HERESSSQVK ELEAHIESSE KLVADFTQSL NNAEEEKKLL SQKIAELSNE IQEAQNTMQE
0401: LMSESGQLKE SHSVKERELF SLRDIHEIHQ RDSSTRASEL EAQLESSKQQ VSDLSASLKA AEEENKAISS KNVETMNKLE QTQNTIQELM AELGKLKDSH
0501: REKESELSSL VEVHETHQRD SSIHVKELEE QVESSKKLVA ELNQTLNNAE EEKKVLSQKI AELSNEIKEA QNTIQELVSE SGQLKESHSV KDRDLFSLRD
0601: IHETHQRESS TRVSELEAQL ESSEQRISDL TVDLKDAEEE NKAISSKNLE IMDKLEQAQN TIKELMDELG ELKDRHKEKE SELSSLVKSA DQQVADMKQS
0701: LDNAEEEKKM LSQRILDISN EIQEAQKTIQ EHMSESEQLK ESHGVKEREL TGLRDIHETH QRESSTRLSE LETQLKLLEQ RVVDLSASLN AAEEEKKSLS
0801: SMILEITDEL KQAQSKVQEL VTELAESKDT LTQKENELSS FVEVHEAHKR DSSSQVKELE ARVESAEEQV KELNQNLNSS EEEKKILSQQ ISEMSIKIKR
0901: AESTIQELSS ESERLKGSHA EKDNELFSLR DIHETHQREL STQLRGLEAQ LESSEHRVLE LSESLKAAEE ESRTMSTKIS ETSDELERTQ IMVQELTADS
1001: SKLKEQLAEK ESKLFLLTEK DSKSQVQIKE LEATVATLEL ELESVRARII DLETEIASKT TVVEQLEAQN REMVARISEL EKTMEERGTE LSALTQKLED
1101: NDKQSSSSIE TLTAEIDGLR AELDSMSVQK EEVEKQMVCK SEEASVKIKR LDDEVNGLRQ QVASLDSQRA ELEIQLEKKS EEISEYLSQI TNLKEEIINK
1201: VKVHESILEE INGLSEKIKG RELELETLGK QRSELDEELR TKKEENVQMH DKINVASSEI MALTELINNL KNELDSLQVQ KSETEAELER EKQEKSELSN
1301: QITDVQKALV EQEAAYNTLE EEHKQINELF KETEATLNKV TVDYKEAQRL LEERGKEVTS RDSTIGVHEE TMESLRNELE MKGDEIETLM EKISNIEVKL
1401: RLSNQKLRVT EQVLTEKEEA FRKEEAKHLE EQALLEKNLT MTHETYRGMI KEIADKVNIT VDGFQSMSEK LTEKQGRYEK TVMEASKILW TATNWVIERN
1501: HEKEKMNKEI EKKDEEIKKL GGKVREDEKE KEMMKETLMG LGEEKREAIR QLCVWIDHHR SRCEYLEEVL SKTVVARGQR RVSQRT
Arabidopsis Description
CIP1COP1-interactive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JZY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.