Factsheet for TraesCS1A01G442500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G476600.1	Wheat	mitochondrion	99.15	99.15
TraesCS1D01G450300.1	Wheat	mitochondrion, plastid	98.3	99.14
TraesCS1A01G442600.1	Wheat	cytosol	12.89	19.2
TraesCS3A01G251600.2	Wheat	cytosol	12.75	19.03
TraesCS3A01G207000.2	Wheat	cytosol	12.46	18.84
TraesCS6A01G225600.1	Wheat	cytosol	11.47	17.38
TraesCS5A01G426700.2	Wheat	cytosol	11.76	17.33
TraesCS6A01G378000.1	Wheat	cytosol	11.33	16.91
TraesCS6A01G196400.2	Wheat	cytosol	8.64	14.88
TraesCS3A01G155400.4	Wheat	cytosol	8.36	14.6
TraesCS1A01G442800.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	6.09	12.11
TraesCS4A01G458900.1	Wheat	cytosol	5.81	11.92
TraesCS5A01G000600.2	Wheat	cytosol	6.94	8.21
TraesCS3A01G311600.3	Wheat	cytosol	6.66	7.74
TraesCS1A01G123900.2	Wheat	cytosol	6.66	7.7
TraesCS3A01G275100.1	Wheat	cytosol	6.66	7.04
TraesCS2A01G238600.1	Wheat	cytosol	6.66	6.67
TraesCS5A01G431600.1	Wheat	mitochondrion	6.52	6.5
TraesCS3A01G323100.2	Wheat	nucleus	5.95	6.05

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.760	MapMan:19.4.5.8.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	InterPro:FtsH	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	HAMAP:MF_01458	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF01434	ScanProsite:PS00674	PANTHER:PTHR23076	PANTHER:PTHR23076:SF73	InterPro:Peptidase_M41	InterPro:Peptidase_M41-like
SMART:SM00382	SUPFAM:SSF140990	SUPFAM:SSF52540	TIGRFAMs:TIGR01241	EnsemblPlantsGene:TraesCS1A01G442500	EnsemblPlants:TraesCS1A01G442500.1
TIGR:cd00009	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:591147159..591152443

Molecular Weight (calculated)

75770.7 Da

IEP (calculated)

9.258

GRAVY (calculated)

-0.211

Length

706 amino acids

Sequence
(BLAST)

001: MAWRLALSKA GRRSSSVVYN ELVSTSAFRT PANGTGGVLK ALQERYRSSY VGSFARRLRD FDTPSDASLL KEIYRSNPER VVQIFESQPS LHNNSSALSQ
101: YVKALVALDR LDESPLLKTL QRGIVNSARE EEGFSGIPAF QSVGRTTKDG ALGTAGAPIH MVASETGQFK EQLWRTFRSI ALTFLVISGI GALIEDRGIS
201: KGLGLHEEVQ PSLDSSTKFS DVKGVDEAKA ELEEIVHYLR DPKRFTRLGG KLPKGVLLVG PPGTGKTMLA RAIAGEAGVP FFSCSGSEFE EMFVGVGARR
301: VRDLFSAAKK RSPCIIFIDE IDAIGGSRNP KDQQYMKMTL NQLLVELDGF KQNDGIIVIA ATNFPQSLDK ALVRPGRFDR HIVVPNPDVE GRRQILETHM
401: SKVLKADDVD LMTIARGTPG FSGADLANLV NVAALKAAMD GAKSVSMTDL EFAKDRIMMG SERKSAVISD ESRKMTAYHE GGHALVAIHT AGAHPVHKAT
501: IVPRGMALGM VTQLPEKDQT SVSRKQMLAR LDVCMGGRVA EELIFGESEV TSGASSDLSQ ATRLAKAMVT KYGMSKRVGL VAYNYDDDGK TMSTQTRGLV
601: EQEVKELLET AYNNAKTILT THNKELHALA NALIERETLT GAQIKNLLSQ VNSSSDTQQP QAAEVPQQTP AAPASPQSPA AAAAAAAAAA AQQAAAQAKG
701: VAGIGS

Best Arabidopsis Sequence Match ( AT2G26140.1 )
(BLAST)

001: MAWRRIITKV SSHERELSSL RSLLVRAYSS FPRVGVTGAV GGGGASLPRT RFQSSYVGSF ARRVRDREEV NEVAHLRELI RRNDPEAVIR MFESQPSLHA
101: NASALSEYIK ALVKVDRLDQ SELVRTLQRG IAGVAREEET FGGLGAFRNV GKPTKDGVLG TASAPIHTIS TERTHFKEQL WSTIRTIGVG FLLISGIGAL
201: IEDRGIGKGL GLHEEVQPSM DSSTKFSDVK GVDEAKAELE EIVHYLRDPK RFTRLGGKLP KGVLLVGPPG TGKTMLARAI AGEAGVPFFS CSGSEFEEMF
301: VGVGARRVRD LFSAAKKCSP CIIFIDEIDA IGGSRNPKDQ QYMKMTLNQM LVELDGFKQN EGIIVVAATN FPESLDKALV RPGRFDRHIV VPNPDVEGRR
401: QILESHMSKV LKAEDVDLMI IARGTPGFSG ADLANLVNVA ALKAAMDGSK DVTMSDLEFA KDRIMMGSER KSAVISDESR KLTAFHEGGH ALVAIHTEGA
501: LPVHKATIVP RGMALGMVSQ LPDKDETSIS RKQMLARLDV CMGGRVAEEL IFGESEVTSG ASSDLEQATK LARAMVTKFG MSKEVGLVAH NYDDNGKSMS
601: TETRLLIESE VKQLLEKAYN NAKTILTVYN KELHALANAL LQHETLSGKQ IKELLTDLNS PLLQKRQEVV TKQSNPVPPS TPSSASSAAA AAAAAAAAAA
701: AAAATAATKG KDMAPVS

Arabidopsis Description

FTSH4ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80983]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.