Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G050200.1 | Wheat | extracellular | 66.67 | 63.53 |
| TraesCS5D01G049200.1 | Wheat | plastid | 69.14 | 58.95 |
| TraesCS5B01G045000.1 | Wheat | mitochondrion | 70.37 | 55.88 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G050100.1 | EnsemblPlantsGene:TraesCS5D01G050100 | PFAM:PD865005 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:47782969..47783344
Molecular Weight (calculated)
8170.9 Da
IEP (calculated)
10.193
GRAVY (calculated)
0.135
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MASAGRRPTV LMQIALFFVV AAVIMNSSVC LGAAAGDATA GSGAFDPNRP AVPSTGGAGK PYTGRRCLPK YRCYPPAGGQ P
001: MEQKQHILKQ STFSSSPSSY SSISDRPISL LSRNGLLLLL LALVLLLGVL LPWPGSPLFL FPNRLSSSLS PSPQSKWRDY TLAQAARFVA KNGTVIVCAV
101: SSPFLPFLNN WLISVSRQKH QDKVLVIAED YITLYKVNEK WPGHAVLIPP ALDSKTAFSF GSQGFFNFTA RRPQHLLQIL ELGYNVMYND VDMVWLQDPF
201: LYLEGSHDAY FTDDMPQIKP LNHSHDLPHP DRNGETYICS CMIYLRPTNG AKLLMKKWSE ELQSQAWSES IRFKANDQPA FNLALNKTAH QVCFCFLHVL
301: FLLYLLINVG FMVFLLVSLV TLTCFVIFCS AGGSLLAFSS SFPNRRIVLQ ERGMGSRDKG ETCHSPQ
101: SSPFLPFLNN WLISVSRQKH QDKVLVIAED YITLYKVNEK WPGHAVLIPP ALDSKTAFSF GSQGFFNFTA RRPQHLLQIL ELGYNVMYND VDMVWLQDPF
201: LYLEGSHDAY FTDDMPQIKP LNHSHDLPHP DRNGETYICS CMIYLRPTNG AKLLMKKWSE ELQSQAWSES IRFKANDQPA FNLALNKTAH QVCFCFLHVL
301: FLLYLLINVG FMVFLLVSLV TLTCFVIFCS AGGSLLAFSS SFPNRRIVLQ ERGMGSRDKG ETCHSPQ
Arabidopsis Description
RGXT1rhamnogalacturonan xylosyltransferase 1 [Source:TAIR;Acc:AT4G01770]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.