Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29392 | Sorghum | plasma membrane | 67.86 | 34.73 |
| Zm00001d015133_P001 | Maize | cytosol, peroxisome, plasma membrane | 61.07 | 30.76 |
| TraesCSU01G131800.1 | Wheat | plasma membrane | 17.86 | 10.48 |
| TraesCSU01G131600.1 | Wheat | plasma membrane | 17.14 | 9.86 |
Protein Annotations
| EnsemblPlants:TraesCSU01G077000.2 | EnsemblPlantsGene:TraesCSU01G077000 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0030001 | GO:GO:0046873 | InterPro:NRAMP_fam | PANTHER:PTHR11706 |
| PANTHER:PTHR11706:SF48 | PFAM:PF01566 | PRINTS:PR00447 | SEG:seg | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chrUn:-:69191534..69193788
Molecular Weight (calculated)
30627.8 Da
IEP (calculated)
7.276
GRAVY (calculated)
0.056
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAGERDEI GHEPHHGGAV QSGGKHKDST TGDEKDGEFQ VQPRWRKFLA HVGSGALVAI GFLDPSNSSV GRLSWDDLCA LYTNIIRQPW SENRYLSLNN
101: LSWFLHIKSA LIAQSCTGRH LAELCREEYP PFVNICLWII AELAVISDDI PEVLGTAFAF NILFKIPVWA GVILTVFSTL LLLGVQRFGA RKLEFIIAAF
201: MFTMAGCFFG ELSYLSPSAR DVTKGMFVPS LRGKGAAANA MALFGAIIHR TTCSCTLPWS SHGRPHGQTK ASERPADTSS
101: LSWFLHIKSA LIAQSCTGRH LAELCREEYP PFVNICLWII AELAVISDDI PEVLGTAFAF NILFKIPVWA GVILTVFSTL LLLGVQRFGA RKLEFIIAAF
201: MFTMAGCFFG ELSYLSPSAR DVTKGMFVPS LRGKGAAANA MALFGAIIHR TTCSCTLPWS SHGRPHGQTK ASERPADTSS
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.