Factsheet for VIT_06s0004g05170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	cytosol, extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g00810.t01	Wine grape	plasma membrane	56.3	55.88
VIT_13s0019g02040.t01	Wine grape	plasma membrane	53.19	52.87
VIT_08s0007g00830.t01	Wine grape	plasma membrane	51.85	50.58
VIT_13s0067g01640.t01	Wine grape	vacuole	49.04	49.18
VIT_13s0067g01590.t01	Wine grape	plasma membrane, vacuole	48.3	48.37
VIT_12s0055g00500.t01	Wine grape	plasma membrane	46.07	48.22

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100246749	wikigene:100246749	MapMan:18.4.1.19	Gene3D:2.60.120.200	Gene3D:3.30.200.20
ProteinID:CCB43546	ProteinID:CCB43546.1	InterPro:ConA-like_dom_sf	UniProt:F6GUY7	EMBL:FN594951	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0030246	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100246749	wikigene:LOC100246749	InterPro:Legume_lectin_dom	PFAM:PF00069	PFAM:PF00139
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27007	PANTHER:PTHR27007:SF66	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF49899	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00015C81C2	ArrayExpress:VIT_06s0004g05170	EnsemblPlantsGene:VIT_06s0004g05170	EnsemblPlants:VIT_06s0004g05170.t01	unigene:Vvi.18395
RefSeq:XP_002280641	RefSeq:XP_002280641.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:6103829..6105916

Molecular Weight (calculated)

74251.3 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.050

Length

675 amino acids

Sequence
(BLAST)

001: MATTVTSLHF LIILFTSVKL LALAEEEAQF IHNGFQGASL HLGGIAKIHP NGLLQLTNTS KQQIGRAFFP LPLKFNTSSG DSRSLSFSTI FAFAIVPEWQ
101: ALGGHGIVFT IAPSMDFPGA VASQYLGLFN VTNNGNSSNH VFAVELDTIL SPDLKDTDGN HVGVDVNSLD SEVSAPVTYF SNKEGKNKSL ELISGKAMQV
201: WIDYDDVQKL INVTVAPLKS PKPSMPLLST PINLSSIFLE SMYVGFSSAT GAMASDHYIL GWSFNRSGEA QSLEISELPS LPPRKKERKT LVVIVLLSLT
301: TLVIVLVVLM GAGYIIRKLK FEELREEWEG EYGPQRFSYK DLYKATKGFK DKELLGAGGF GKVYRGRLPS SNLEIAVKKV SHDSKQGMRE FVAEIASMGR
401: LRHRNLVQLL GYCRRRGELL LVYDHMPNGS LDKFLFSDEN PILTWPQRYH ILRGVASSLL YLHEEWEQVV LHRDVKASNV LLDANLNGRL GDFGLAKLYD
501: HDTNPQTTHV VGTVGYLAPE LTRTGKATSS TDVFAFGAFM LETACGRRPV ELQGYPEGGV LLDWVLECWK RGAILLTSDP RLEGHYVAEE MELVLKLGLL
601: CSSPIPAVRP SMRQVMQYLN GDAPLPEIPR NFSSMGTFGA NGEESAEVIT SFPSSSGTTT IRSFSSSDSI LNQGR

Best Arabidopsis Sequence Match ( AT3G53810.1 )
(BLAST)

001: MFVKLKLIFF FFLLCQIMIS SSQNLNFTYN GFHPPLTDIS LQGLATVTPN GLLKLTNTSV QKTGHAFCTE RIRFKDSQNG NVSSFSTTFV FAIHSQIPTL
101: SGHGIAFVVA PTLGLPFALP SQYIGLFNIS NNGNDTNHIF AVEFDTIQSS EFGDPNDNHV GIDLNGLRSA NYSTAGYRDD HDKFQNLSLI SRKRIQVWID
201: YDNRSHRIDV TVAPFDSDKP RKPLVSYVRD LSSILLEDMY VGFSSATGSV LSEHFLVGWS FRLNGEAPML SLSKLPKLPR FEPRRISEFY KIGMPLISLS
301: LIFSIIFLAF YIVRRKKKYE EELDDWETEF GKNRFRFKEL YHATKGFKEK DLLGSGGFGR VYRGILPTTK LEVAVKRVSH DSKQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNNPETT LDWKQRSTII KGVASGLFYL HEEWEQVVIH RDVKASNVLL DADFNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHS RTGRATTTTD VYAFGAFLLE VVSGRRPIEF HSASDDTFLL VEWVFSLWLR GNIMEAKDPK LGSSGYDLEE VEMVLKLGLL
601: CSHSDPRARP SMRQVLQYLR GDMALPELTP LDLSAGSVMN LGGRDGFSGI AMTDFSTVFK GFTGGSSIAD SLLSGGR

Arabidopsis Description

LECRK42L-type lectin-domain containing receptor kinase IV.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M345]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.