Factsheet for Zm00001d038456_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023262_P029	Maize	cytosol	71.02	16.35
KXG22838	Sorghum	cytosol	67.2	15.54
Os08t0544500-01	Rice	plasma membrane	60.83	14.05
TraesCS7B01G167200.1	Wheat	cytosol	60.51	14.0
TraesCS7A01G268900.4	Wheat	cytosol	60.83	13.95
TraesCS7D01G269500.4	Wheat	cytosol	60.19	13.68
HORVU7Hr1G056570.7	Barley	mitochondrion	60.19	13.38
GSMUA_Achr10P...	Banana	cytosol	39.17	9.55
Zm00001d046391_P001	Maize	plasma membrane	7.32	7.3
Zm00001d016436_P003	Maize	nucleus	6.05	6.48
Zm00001d006546_P001	Maize	nucleus	1.59	1.5

Protein Annotations

MapMan:19.1.7.3	Gene3D:2.30.33.40	UniProt:A0A1D6M6G1	ProteinID:AQK86666.1	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	InterPro:GroES-like_sf	InterPro:IPR037124	InterPro:Nck-associated_protein-1	PFAM:PF00166	PFAM:PF09735
PRINTS:PR00297	PANTHER:PTHR10772	PANTHER:PTHR10772:SF12	SMART:SM00883	SUPFAM:SSF50129	UniParc:UPI000843C2E6
EnsemblPlantsGene:Zm00001d038456	EnsemblPlants:Zm00001d038456_P001	EnsemblPlants:Zm00001d038456_T001	SEG:seg	:	:

Description

pco066521Chaperonin

Coordinates

chr6:+:157648981..157650905

Molecular Weight (calculated)

34245.7 Da

IEP (calculated)

9.606

GRAVY (calculated)

-0.345

Length

314 amino acids

Sequence
(BLAST)

001: MAKRLLPSLN RVLVEKLVQP KKTAGGILLP ETSKQLNAAK VVAVGPGERD KAGNLIPVAL KEGDTVLLPE YGGSEVKLAA DKDCNCTSKC SAFTTKRKDA
101: GAANDNSWIL LPYLCAAFMV SNIWNGAVYD VNIGGLSNNL HCLARCVSAV IEGSEYTRVE REQRINSLSN VHTDELQEAE LPSRVSAEAN IKSSMQIYVK
201: LSAGVVLDSW NDTSRYLVHC IFRIRVWQRF PTTPRSHTFE PGYYSSSGSQ HDDGYDADRR AGRLLRSMRR SGPLDFGASR KAKKFVEGSS SGSSHGAGSL
301: QRFAVSRSGP LSYK

Best Arabidopsis Sequence Match ( AT1G14980.2 )
(BLAST)

1: MMKRLIPTFN RILVQRVIQP AKTESGILLP EKSSKLNSGK VIAVGPGSRD KDGKLIPVSV KEGDTVLLPE YGGTQVKLGE ND

Arabidopsis Description

CPN1010 kDa chaperonin, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34893]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.