Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016087.1-P | Field mustard | nucleus | 58.73 | 36.82 |
| CDX96373 | Canola | nucleus | 57.94 | 36.32 |
| CDY70323 | Canola | cytosol | 57.94 | 31.74 |
| AT1G80920.1 | Thale cress | plastid | 34.13 | 26.38 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:35.2 | EntrezGene:843538 | ProteinID:AEE35270.1 | ArrayExpress:AT1G72070 | EnsemblPlantsGene:AT1G72070 |
| RefSeq:AT1G72070 | TAIR:AT1G72070 | RefSeq:AT1G72070-TAIR-G | EnsemblPlants:AT1G72070.1 | TAIR:AT1G72070.1 | ncoils:Coil |
| InterPro:DnaJ_domain | UniProt:F4IBN6 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | RefSeq:NP_565034.1 |
| PFAM:PF00226 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00625 |
| PFscan:PS50076 | PANTHER:PTHR44360 | SMART:SM00271 | SUPFAM:SSF46565 | UniParc:UPI0000163296 | SEG:seg |
Description
Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IBN6]
Coordinates
chr1:-:27118621..27119918
Molecular Weight (calculated)
14676.6 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.688
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRNFRFKAP TNHPGSTIQT DSRRLIQFPT RCCLSPDLSH YTVLGLTPLA SQTEVKRAFK RLALKYHPDV HKGQDKDFKE IKSAYECLMQ KFKKEEEEME
101: ITEMGEIDEW EEWMGFEGGI PSGISY
101: ITEMGEIDEW EEWMGFEGGI PSGISY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.