Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016087.1-P | Field mustard | nucleus | 99.5 | 99.5 |
| CDY70323 | Canola | cytosol | 90.55 | 79.13 |
| AT1G72070.1 | Thale cress | cytosol | 36.32 | 57.94 |
| CDY22291 | Canola | plastid | 20.4 | 27.15 |
| CDX87353 | Canola | plastid | 21.39 | 26.54 |
| CDX67975 | Canola | plastid | 20.9 | 25.93 |
| CDX88567 | Canola | plastid | 20.9 | 25.93 |
| CDX79343 | Canola | plastid | 20.4 | 25.31 |
Protein Annotations
| EnsemblPlants:CDX96373 | EnsemblPlantsGene:GSBRNA2T00102526001 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:IPR001623 | InterPro:IPR036869 |
| InterPro:J_dom_sf | ncoils:Coil | PANTHER:PTHR44360 | PFAM:PF00226 | PFscan:PS50076 | PRINTS:PR00625 |
| ProteinID:CDX96373 | ProteinID:CDX96373.1 | SEG:seg | SMART:SM00271 | SUPFAM:SSF46565 | UniParc:UPI0004EE6F36 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA07g29840D
Coordinates
chrLK031894:-:528370..531217
Molecular Weight (calculated)
22636.9 Da
IEP (calculated)
4.597
GRAVY (calculated)
-0.894
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCGLNEAVQ ANESEAISIS DEDHGNPISS VYSENNCVRG RAGGRGRNHR RGRGRGRGRG RDNHDLGGPS RNSSDNRSLR QRCPVLGSQV NNDVVEVVNL
101: ESYTDEDDLS HYTVLGLTPF PSQAEVKRAF KRLALKYHPD VQKGQEKDFK EIISAYECLM QKFESQEEEE VEEITELDAT DEWEEWMGFE GGIPSSVYTS
201: F
101: ESYTDEDDLS HYTVLGLTPF PSQAEVKRAF KRLALKYHPD VQKGQEKDFK EIISAYECLM QKFESQEEEE VEEITELDAT DEWEEWMGFE GGIPSSVYTS
201: F
001: MIRNFRFKAP TNHPGSTIQT DSRRLIQFPT RCCLSPDLSH YTVLGLTPLA SQTEVKRAFK RLALKYHPDV HKGQDKDFKE IKSAYECLMQ KFKKEEEEME
101: ITEMGEIDEW EEWMGFEGGI PSGISY
101: ITEMGEIDEW EEWMGFEGGI PSGISY
Arabidopsis Description
Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IBN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.