CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87353	Canola	plastid	98.15	98.15
CDX79343	Canola	plastid	93.83	93.83
CDX67975	Canola	plastid	93.21	93.21
AT1G80920.1	Thale cress	plastid	93.21	92.64
CDY22291	Canola	plastid	78.4	84.11
KRH47322	Soybean	plastid	50.0	51.92
PGSC0003DMT400073306	Potato	cytosol	51.85	51.85
Solyc03g117590.2.1	Tomato	plastid	50.62	50.93
KRH44579	Soybean	plastid	44.44	50.7
PGSC0003DMT400036852	Potato	plastid	50.0	50.0
Solyc06g068500.2.1	Tomato	plastid	49.38	49.38
GSMUA_Achr1P10150_001	Banana	mitochondrion	40.74	48.18
VIT_09s0018g00620.t01	Wine grape	plastid	45.06	48.03
GSMUA_AchrUn_...	Banana	plastid	46.91	45.24
GSMUA_Achr7P05310_001	Banana	mitochondrion	40.74	43.42
Os06t0650900-02	Rice	plastid	27.78	31.69
EES05389	Sorghum	plastid	29.01	30.72
TraesCS7B01G415000.1	Wheat	plastid	25.31	29.08
TraesCS7D01G494800.1	Wheat	plastid	22.84	28.03
EER90130	Sorghum	plastid	29.01	27.65
Zm00001d046813_P003	Maize	plastid	25.93	27.27
Zm00001d046812_P001	Maize	plastid	25.93	27.27
TraesCS7B01G413400.1	Wheat	mitochondrion, plastid	23.46	26.95
TraesCS7D01G494000.1	Wheat	plastid	25.31	26.11
TraesCSU01G098500.1	Wheat	plastid	24.07	25.83
TraesCS7D01G495200.1	Wheat	plastid	24.07	25.49
TraesCS7A01G506000.1	Wheat	plastid	24.69	25.48
TraesCS7D01G494100.1	Wheat	plastid	15.43	25.25
TraesCS7D01G494900.1	Wheat	plastid	22.84	25.17
TraesCS7B01G413500.1	Wheat	mitochondrion, plastid	15.43	24.75
HORVU7Hr1G113530.1	Barley	plastid	23.46	23.9
HORVU7Hr1G113460.1	Barley	plastid	23.46	23.9
TraesCS7A01G506100.1	Wheat	plastid	20.99	22.08
TraesCS7A01G506700.1	Wheat	plastid	22.84	21.51
CDX96373	Canola	nucleus	25.93	20.9
CDY70323	Canola	cytosol	25.93	18.26
TraesCS7D01G495500.1	Wheat	plastid	25.31	14.29
TraesCS7B01G414800.1	Wheat	nucleus	25.31	13.85

Protein Annotations

EnsemblPlants:CDX88567	EnsemblPlantsGene:GSBRNA2T00148130001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR24074	PANTHER:PTHR24074:SF12	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
ProteinID:CDX88567	ProteinID:CDX88567.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0003E6F998
MapMan:23.1.2.5	:	:	:	:	:

Description

BnaC06g40110D

Coordinates

chrLK031855:+:1661475..1662456

Molecular Weight (calculated)

18218.3 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.696

Length

162 amino acids

Sequence
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSASSSLRLK NSRRKNTKML NRKGVVCSSS SVMDPYKTLR IRPDSSEYEV KQAFRQLAKK YHPDVCRGSN CGVQFQTINE
101: AYDIVLKQIK NQMEGAEEFQ PFDVYEEGFN GMNDPDCETW EEWMGWEGAG TRDYSSHVNP YA

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.