Factsheet for VIT_09s0018g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47322	Soybean	plastid	61.84	60.26
GSMUA_Achr1P10150_001	Banana	mitochondrion	51.97	57.66
PGSC0003DMT400073306	Potato	cytosol	59.87	56.17
PGSC0003DMT400036852	Potato	plastid	59.21	55.56
Solyc06g068500.2.1	Tomato	plastid	59.21	55.56
KRH44579	Soybean	plastid	51.32	54.93
Solyc03g117590.2.1	Tomato	plastid	55.92	52.8
GSMUA_Achr7P05310_001	Banana	mitochondrion	50.66	50.66
GSMUA_AchrUn_...	Banana	plastid	52.63	47.62
CDY22291	Canola	plastid	46.71	47.02
Bra008430.1-P	Field mustard	plastid	46.71	47.02
AT1G80920.1	Thale cress	plastid	49.34	46.01
CDX88567	Canola	plastid	48.03	45.06
CDX87353	Canola	plastid	48.03	45.06
CDX79343	Canola	plastid	48.03	45.06
Bra035143.1-P	Field mustard	plastid	47.37	44.44
Bra003592.1-P	Field mustard	plastid	46.71	43.83
CDX67975	Canola	plastid	46.71	43.83
TraesCS7B01G413400.1	Wheat	mitochondrion, plastid	33.55	36.17
TraesCSU01G098500.1	Wheat	plastid	35.53	35.76
Os06t0650900-02	Rice	plastid	32.24	34.51
TraesCS7B01G415000.1	Wheat	plastid	31.58	34.04
TraesCS7D01G495200.1	Wheat	plastid	34.21	33.99
TraesCS7D01G494900.1	Wheat	plastid	31.58	32.65
TraesCS7D01G494800.1	Wheat	plastid	28.29	32.58
TraesCS7A01G506000.1	Wheat	plastid	33.55	32.48
TraesCS7D01G494000.1	Wheat	plastid	32.89	31.85
EES05389	Sorghum	plastid	31.58	31.37
TraesCS7D01G494100.1	Wheat	plastid	20.39	31.31
Zm00001d046813_P003	Maize	plastid	31.58	31.17
Zm00001d046812_P001	Maize	plastid	31.58	31.17
HORVU7Hr1G113460.1	Barley	plastid	31.58	30.19
HORVU7Hr1G113530.1	Barley	plastid	31.58	30.19
TraesCS7A01G506100.1	Wheat	plastid	29.61	29.22
TraesCS7B01G413500.1	Wheat	mitochondrion, plastid	18.42	27.72
EER90130	Sorghum	plastid	30.92	27.65
TraesCS7A01G506700.1	Wheat	plastid	30.92	27.33
TraesCS7D01G495500.1	Wheat	plastid	32.89	17.42
TraesCS7B01G414800.1	Wheat	nucleus	33.55	17.23

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100250200	wikigene:100250200	MapMan:23.1.2.5	EMBL:AM481358	ProteinID:CAN81795
ProteinID:CAN81795.1	ProteinID:CCB49674	ProteinID:CCB49674.1	InterPro:DnaJ_domain	UniProt:F6HBS5	EMBL:FN595513
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100250200	wikigene:LOC100250200	PFAM:PF00226
PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR24074	PANTHER:PTHR24074:SF12	SMART:SM00271	SUPFAM:SSF46565
TIGR:TC53102	TIGR:TC53381	TIGR:TC69871	UniParc:UPI00015CB9D4	ArrayExpress:VIT_09s0018g00620	EnsemblPlantsGene:VIT_09s0018g00620
EnsemblPlants:VIT_09s0018g00620.t01	unigene:Vvi.6800	RefSeq:XP_002263153	RefSeq:XP_002263153.1	RefSeq:XP_002263187	RefSeq:XP_002263187.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:16881863..16882927

Molecular Weight (calculated)

17358.3 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.697

Length

152 amino acids

Sequence
(BLAST)

001: MAVSGVGEMI GAGGSSPWIQ LRDRWSRKKA NRSRVSRVSA SLNLTDPYKT LRIQPGASES EVKKAFRRLA LQYHPDVCRG SNCGVQFHLI NEAYDTVMSN
101: FREESTSTGE MLEEMDESMR GYDDPDWELW EEWMGWEGAG IRDYSSHINP YI

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.