CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67975	Canola	plastid	98.15	98.15
CDX87353	Canola	plastid	95.68	95.68
AT1G80920.1	Thale cress	plastid	95.06	94.48
CDX88567	Canola	plastid	93.83	93.83
CDY22291	Canola	plastid	80.25	86.09
KRH47322	Soybean	plastid	52.47	54.49
Solyc03g117590.2.1	Tomato	plastid	53.09	53.42
PGSC0003DMT400036852	Potato	plastid	52.47	52.47
PGSC0003DMT400073306	Potato	cytosol	52.47	52.47
KRH44579	Soybean	plastid	45.06	51.41
Solyc06g068500.2.1	Tomato	plastid	50.62	50.62
GSMUA_Achr1P10150_001	Banana	mitochondrion	41.98	49.63
VIT_09s0018g00620.t01	Wine grape	plastid	45.06	48.03
GSMUA_AchrUn_...	Banana	plastid	46.91	45.24
GSMUA_Achr7P05310_001	Banana	mitochondrion	41.36	44.08
EES05389	Sorghum	plastid	29.63	31.37
TraesCS7B01G415000.1	Wheat	plastid	26.54	30.5
Os06t0650900-02	Rice	plastid	26.54	30.28
Zm00001d046813_P003	Maize	plastid	25.93	27.27
Zm00001d046812_P001	Maize	plastid	25.93	27.27
EER90130	Sorghum	plastid	28.4	27.06
TraesCS7D01G494800.1	Wheat	plastid	21.6	26.52
TraesCSU01G098500.1	Wheat	plastid	24.69	26.49
TraesCS7D01G494900.1	Wheat	plastid	23.46	25.85
TraesCS7B01G413400.1	Wheat	mitochondrion, plastid	22.22	25.53
TraesCS7D01G495200.1	Wheat	plastid	24.07	25.49
TraesCS7D01G494000.1	Wheat	plastid	24.07	24.84
TraesCS7D01G494100.1	Wheat	plastid	14.81	24.24
TraesCS7A01G506000.1	Wheat	plastid	23.46	24.2
TraesCS7B01G413500.1	Wheat	mitochondrion, plastid	14.81	23.76
HORVU7Hr1G113530.1	Barley	plastid	22.22	22.64
HORVU7Hr1G113460.1	Barley	plastid	22.22	22.64
TraesCS7A01G506100.1	Wheat	plastid	19.75	20.78
CDX96373	Canola	nucleus	25.31	20.4
TraesCS7A01G506700.1	Wheat	plastid	21.6	20.35
CDY70323	Canola	cytosol	25.31	17.83
TraesCS7D01G495500.1	Wheat	plastid	25.31	14.29
TraesCS7B01G414800.1	Wheat	nucleus	24.69	13.51

Protein Annotations

EnsemblPlants:CDX79343	EnsemblPlantsGene:GSBRNA2T00132026001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR43096	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	ProteinID:CDX79343
ProteinID:CDX79343.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000189D088	MapMan:23.1.2.5

Description

BnaC06g19600D

Coordinates

chrLK031817:+:1489736..1490667

Molecular Weight (calculated)

18178.1 Da

IEP (calculated)

5.266

GRAVY (calculated)

-0.701

Length

162 amino acids

Sequence
(BLAST)

001: MTIALTIGGN GFSGLSGSSF SSSSSSFRLK NSKRKDTKML NRTGVVCSSS SVMDPYKTLK IRPDSSEYEV KQAFRQLAKK YHPDVCRGSN CGVQFQTINE
101: AYDIVLKQIK NQMEGTEEFQ PFDVYDEGFN GMNDPDCDTW EEWMGWEGAG TRDYSSHVNP YA

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.