Factsheet for GSMUA_Achr7P05310_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10150_001	Banana	mitochondrion	55.92	62.04
GSMUA_AchrUn_...	Banana	plastid	63.16	57.14
GSMUA_Achr2P05050_001	Banana	plastid	50.66	52.74
KRH47322	Soybean	plastid	52.63	51.28
VIT_09s0018g00620.t01	Wine grape	plastid	50.66	50.66
KRH44579	Soybean	plastid	46.05	49.3
Solyc03g117590.2.1	Tomato	plastid	49.34	46.58
PGSC0003DMT400073306	Potato	cytosol	49.34	46.3
Solyc06g068500.2.1	Tomato	plastid	49.34	46.3
PGSC0003DMT400036852	Potato	plastid	48.03	45.06
CDX79343	Canola	plastid	44.08	41.36
CDX87353	Canola	plastid	44.08	41.36
Bra035143.1-P	Field mustard	plastid	44.08	41.36
CDY22291	Canola	plastid	40.79	41.06
CDX88567	Canola	plastid	43.42	40.74
AT1G80920.1	Thale cress	plastid	43.42	40.49
Bra008430.1-P	Field mustard	plastid	40.13	40.4
CDX67975	Canola	plastid	42.11	39.51
Bra003592.1-P	Field mustard	plastid	42.11	39.51

Protein Annotations

EnsemblPlants:GSMUA_Achr7P05310_001	EnsemblPlants:GSMUA_Achr7T05310_001	EnsemblPlantsGene:GSMUA_Achr7G05310_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR24074	PANTHER:PTHR24074:SF12	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000295950A	UniProt:M0TEX1
MapMan:23.1.2.5	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_18.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G05310_001]

Coordinates

chr7:-:3938287..3939508

Molecular Weight (calculated)

17296.2 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.833

Length

152 amino acids

Sequence
(BLAST)

001: MVASSSSMGS WARRGGVAKG RRKAGRSRGD VRCAAAASLA DQYRMLRVQP GAPEKEVKKA FRKLALQYHP DVCKGSNCDV QFHRINEAYD IVMSSLRQAD
101: QQKQEQWQRP EWSSDGFSDE GMYDSGWDLW EEWMGWEGAG IRDYSSHINP YI

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.