Factsheet for PGSC0003DMT400073306

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068500.2.1	Tomato	plastid	83.33	83.33
KRH47322	Soybean	plastid	64.2	66.67
PGSC0003DMT400036852	Potato	plastid	66.05	66.05
KRH44579	Soybean	plastid	56.17	64.08
VIT_09s0018g00620.t01	Wine grape	plastid	56.17	59.87
GSMUA_Achr1P10150_001	Banana	mitochondrion	48.77	57.66
AT1G80920.1	Thale cress	plastid	53.09	52.76
Bra035143.1-P	Field mustard	plastid	52.47	52.47
CDX79343	Canola	plastid	52.47	52.47
CDX87353	Canola	plastid	52.47	52.47
CDX88567	Canola	plastid	51.85	51.85
CDY22291	Canola	plastid	48.15	51.66
Bra003592.1-P	Field mustard	plastid	51.23	51.23
CDX67975	Canola	plastid	51.23	51.23
Bra008430.1-P	Field mustard	plastid	47.53	50.99
GSMUA_Achr7P05310_001	Banana	mitochondrion	46.3	49.34
GSMUA_AchrUn_...	Banana	plastid	49.38	47.62
TraesCS7D01G494800.1	Wheat	plastid	25.31	31.06
TraesCS7B01G413400.1	Wheat	mitochondrion, plastid	26.54	30.5
TraesCSU01G098500.1	Wheat	plastid	27.78	29.8
Zm00001d046813_P003	Maize	plastid	27.78	29.22
Zm00001d046812_P001	Maize	plastid	27.78	29.22
TraesCS7B01G415000.1	Wheat	plastid	25.31	29.08
Os06t0650900-02	Rice	plastid	25.31	28.87
TraesCS7D01G494900.1	Wheat	plastid	25.31	27.89
EES05389	Sorghum	plastid	25.93	27.45
TraesCS7D01G495200.1	Wheat	plastid	25.93	27.45
TraesCS7A01G506000.1	Wheat	plastid	26.54	27.39
EER90130	Sorghum	plastid	27.78	26.47
TraesCS7D01G494000.1	Wheat	plastid	25.31	26.11
TraesCS7D01G494100.1	Wheat	plastid	15.43	25.25
TraesCS7B01G413500.1	Wheat	mitochondrion, plastid	15.43	24.75
TraesCS7A01G506100.1	Wheat	plastid	23.46	24.68
TraesCS7A01G506700.1	Wheat	plastid	25.93	24.42
HORVU7Hr1G113530.1	Barley	plastid	23.46	23.9
HORVU7Hr1G113460.1	Barley	plastid	23.46	23.9
TraesCS7B01G414800.1	Wheat	nucleus	27.78	15.2
TraesCS7D01G495500.1	Wheat	plastid	25.93	14.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400073306	EnsemblPlantsGene:PGSC0003DMG400028488	EntrezGene:102582221	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR24074	PANTHER:PTHR24074:SF12	PFAM:PF00226	PFscan:PS50076
PGSC:PGSC0003DMG400028488	PRINTS:PR00625	RefSeq:XP_006356255.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI00029623AF	UniProt:M1CRS5	MapMan:23.1.2.5	:	:	:

Description

DnaJ protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028488]

Coordinates

chr6:-:50129920..50132685

Molecular Weight (calculated)

18567.6 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.766

Length

162 amino acids

Sequence
(BLAST)

001: MATAMGMMRN VGSYESASAS WIRLKNCANK KTKRGENIKF GVTCVYSPSV TDPYKTLRIQ PDASESEVRK AFRQLALQYH PDVCRGSNCG IQFHQINDAY
101: DTVMSNLRGE TKSAEMEIYE EYDDDDESMR GVNDPDYDMW EEWMGWEGAG IRDYSSHINP YI

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.