CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003592.1-P	Field mustard	plastid	100.0	100.0
CDX79343	Canola	plastid	98.15	98.15
CDX87353	Canola	plastid	95.06	95.06
AT1G80920.1	Thale cress	plastid	94.44	93.86
CDX88567	Canola	plastid	93.21	93.21
CDY22291	Canola	plastid	80.86	86.75
KRH47322	Soybean	plastid	50.62	52.56
Solyc03g117590.2.1	Tomato	plastid	51.85	52.17
PGSC0003DMT400073306	Potato	cytosol	51.23	51.23
PGSC0003DMT400036852	Potato	plastid	51.23	51.23
KRH44579	Soybean	plastid	43.21	49.3
Solyc06g068500.2.1	Tomato	plastid	48.77	48.77
GSMUA_Achr1P10150_001	Banana	mitochondrion	40.74	48.18
VIT_09s0018g00620.t01	Wine grape	plastid	43.83	46.71
GSMUA_AchrUn_...	Banana	plastid	45.68	44.05
GSMUA_Achr7P05310_001	Banana	mitochondrion	39.51	42.11
EES05389	Sorghum	plastid	30.25	32.03
TraesCS7B01G415000.1	Wheat	plastid	27.16	31.21
Os06t0650900-02	Rice	plastid	26.54	30.28
Zm00001d046813_P003	Maize	plastid	25.31	26.62
Zm00001d046812_P001	Maize	plastid	25.31	26.62
TraesCS7D01G494800.1	Wheat	plastid	21.6	26.52
TraesCSU01G098500.1	Wheat	plastid	24.69	26.49
EER90130	Sorghum	plastid	27.78	26.47
TraesCS7D01G495200.1	Wheat	plastid	24.69	26.14
TraesCS7D01G494900.1	Wheat	plastid	23.46	25.85
TraesCS7B01G413400.1	Wheat	mitochondrion, plastid	22.22	25.53
TraesCS7D01G494000.1	Wheat	plastid	24.69	25.48
TraesCS7A01G506000.1	Wheat	plastid	24.07	24.84
TraesCS7D01G494100.1	Wheat	plastid	14.81	24.24
HORVU7Hr1G113530.1	Barley	plastid	23.46	23.9
HORVU7Hr1G113460.1	Barley	plastid	23.46	23.9
TraesCS7B01G413500.1	Wheat	mitochondrion, plastid	14.81	23.76
CDX96373	Canola	nucleus	25.93	20.9
TraesCS7A01G506100.1	Wheat	plastid	19.75	20.78
TraesCS7A01G506700.1	Wheat	plastid	21.6	20.35
CDY70323	Canola	cytosol	25.93	18.26
TraesCS7D01G495500.1	Wheat	plastid	25.93	14.63
TraesCS7B01G414800.1	Wheat	nucleus	25.31	13.85

Protein Annotations

EnsemblPlants:CDX67975	EnsemblPlantsGene:GSBRNA2T00099187001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR43096	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	ProteinID:CDX67975
ProteinID:CDX67975.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002541368	MapMan:23.1.2.5

Description

BnaA07g20150D

Coordinates

chrLK031787:-:3168261..3169061

Molecular Weight (calculated)

18206.1 Da

IEP (calculated)

5.275

GRAVY (calculated)

-0.705

Length

162 amino acids

Sequence
(BLAST)

001: MTIALTIGGN GFSGLSGSSF SSSSSSFRLK NSRRKDTKML NRTGVVCSSS SVMDPYKTLK IRPDSSEYEV KQAFRQLAKK YHPDVCRGSN CGVEFQTINE
101: AYNIVLKQIK NQMEGTEEFQ PFDVYDEGFN GMNDPDCDTW EEWMGWEGAG TRDYSSHVNP YA

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.