Factsheet for Solyc06g068500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073306	Potato	cytosol	83.33	83.33
KRH47322	Soybean	plastid	62.96	65.38
Solyc03g117590.2.1	Tomato	plastid	64.81	65.22
KRH44579	Soybean	plastid	56.17	64.08
VIT_09s0018g00620.t01	Wine grape	plastid	55.56	59.21
GSMUA_Achr1P10150_001	Banana	mitochondrion	47.53	56.2
CDX79343	Canola	plastid	50.62	50.62
Bra008430.1-P	Field mustard	plastid	46.91	50.33
CDY22291	Canola	plastid	46.91	50.33
AT1G80920.1	Thale cress	plastid	50.62	50.31
Bra035143.1-P	Field mustard	plastid	50.0	50.0
CDX87353	Canola	plastid	50.0	50.0
CDX88567	Canola	plastid	49.38	49.38
GSMUA_Achr7P05310_001	Banana	mitochondrion	46.3	49.34
Bra003592.1-P	Field mustard	plastid	48.77	48.77
CDX67975	Canola	plastid	48.77	48.77
GSMUA_AchrUn_...	Banana	plastid	45.68	44.05
TraesCSU01G098500.1	Wheat	plastid	29.01	31.13
TraesCS7D01G494800.1	Wheat	plastid	25.31	31.06
TraesCS7B01G413400.1	Wheat	mitochondrion, plastid	25.93	29.79
TraesCS7D01G495200.1	Wheat	plastid	27.78	29.41
TraesCS7D01G494900.1	Wheat	plastid	25.93	28.57
TraesCS7B01G415000.1	Wheat	plastid	24.69	28.37
EES05389	Sorghum	plastid	26.54	28.1
TraesCS7A01G506000.1	Wheat	plastid	27.16	28.03
Zm00001d046812_P001	Maize	plastid	25.93	27.27
Zm00001d046813_P003	Maize	plastid	25.93	27.27
TraesCS7D01G494000.1	Wheat	plastid	25.93	26.75
EER90130	Sorghum	plastid	27.78	26.47
Os06t0650900-02	Rice	plastid	22.84	26.06
TraesCS7A01G506100.1	Wheat	plastid	24.69	25.97
HORVU7Hr1G113460.1	Barley	plastid	25.31	25.79
HORVU7Hr1G113530.1	Barley	plastid	25.31	25.79
TraesCS7B01G413500.1	Wheat	mitochondrion, plastid	16.05	25.74
TraesCS7D01G494100.1	Wheat	plastid	15.43	25.25
TraesCS7A01G506700.1	Wheat	plastid	25.93	24.42
TraesCS7D01G495500.1	Wheat	plastid	27.78	15.68
TraesCS7B01G414800.1	Wheat	nucleus	27.16	14.86

Protein Annotations

EnsemblPlants:Solyc06g068500.2.1	EnsemblPlantsGene:Solyc06g068500.2	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR24074	PANTHER:PTHR24074:SF12	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI00027663A7	UniProt:K4C825	MapMan:23.1.2.5

Description

No Description!

Coordinates

chr6:-:42454993..42456979

Molecular Weight (calculated)

18531.6 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.796

Length

162 amino acids

Sequence
(BLAST)

001: MATAMGMMRN VGGYGSASAS WIRLKNRANK KTKRSENVKF GVTCVYSPSL SDPYKTLRIQ PDASESDVRK AFRQLALQYH PDVCRGSNCG IQFHQINDAY
101: DTVMSNLRGE TKNAEMEIYE EYDDDDEAMR GVNDPDYDMW EEWMGWEGAG IRDYSSHINP YI

Best Arabidopsis Sequence Match ( AT1G80920.1 )
(BLAST)

001: MTIALTIGGN GFSGLPGSSF SSSSSSFRLK NSRRKNTKML NRSKVVCSSS SSVMDPYKTL KIRPDSSEYE VKKAFRQLAK KYHPDVCRGS NCGVQFQTIN
101: EAYDIVLKQI KNQMEGTEEF EPFDVYDEGL NGMNDPDCDT WEEWMGWEGA GTRDYSSHVN PYA

Arabidopsis Description

ATJ8Chaperone protein dnaJ 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.